BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941620

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G20650.1 | Symbols: COPT5 | copper transporter 5 | chr5:6985...   723    0.0  


> AT5G20650.1 | Symbols: COPT5 | copper transporter 5 | chr5:6985298-6986037 
REVERSE LENGTH=740
Length=740

 Score =  723 bits (391),  Expect = 0.0
 Identities = 451/480 (94%), Gaps = 4/480 (1%)
 Strand=Plus/Plus

Query  1    CTCAAATCAAGCTCGCAAAGATGATGCACATGACCTTCTACTGGGGAATCAAAGCCACAA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  97   CTCAAATCAAGCTCGCAAAGATGATGCACATGACCTTCTACTGGGGAATCAAAGCCACAA  156

Query  61   TTCTCTTCGATTTCTGGAAAACTGACTCATGGCTCAGTTACATCCTCACTTTAATCGCTT  120
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  157  TTCTCTTCGATTTCTGGAAAACTGACTCATGGCTTAGTTACATCCTCACTTTAATCGCTT  216

Query  121  GCTTCGTCTTCTCCGCTTTCTATCAATACCTCGAGAATCGCCGCATCCAATTCAAATCCC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  217  GCTTCGTCTTCTCCGCTTTCTATCAATACCTCGAGAATCGCCGCATCCAATTCAAATCCC  276

Query  181  TTTCCTCTTCCCGTCGT-C-C-TCCACCGCCTCGCTCTTCCTCCGGCGTCTCTGCTCCTC  237
            |||| || ||||||||| | | |||||||||||||||||||||||||||||| || ||||
Sbjct  277  TTTCTTCCTCCCGTCGTGCTCCTCCACCGCCTCGCTCTTCCTCCGGCGTCTCCGCGCCTC  336

Query  238  TTATCCCCAAATCCGGTACCAGATCCGCCGCTAAAGCTGCTTCGGTGCTTCTTTTCGGTG  297
            ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct  337  TTATCCCTAAATCCGGTACCAGATCCGCCGCTAAAGCTGCTTCGGTTCTTCTTTTCGGCG  396

Query  298  TCAACGCTGCGATCGGGTACTTGCTGATGCTTGCTGCTATGTCCTTCAACGGAGGCGTTT  357
            ||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct  397  TCAACGCAGCGATCGGTTACTTGCTGATGCTTGCAGCTATGTCTTTCAACGGAGGTGTTT  456

Query  358  TCATCGCGATTGTCGTCGGATTGACTGCTGGATACGCCGTTTTCAGATCTGATGACGGCG  417
            |||||||||||||||||||||| || || |||||||| ||||| ||||||||||||||||
Sbjct  457  TCATCGCGATTGTCGTCGGATTAACCGCCGGATACGCTGTTTTTAGATCTGATGACGGCG  516

Query  418  GTGCTGATATCGCGACGGATGATCCATGCCCATGTGCTTGAATCTTGATTGGTGATAAAA  477
            ||||||||| ||| |||||||||||||| |||||||||||| |  |||||| | ||||||
Sbjct  517  GTGCTGATACCGCCACGGATGATCCATGTCCATGTGCTTGA-TAATGATTGATAATAAAA  575



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22756068591


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5