BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941623
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47389.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 416 2e-115
> AT1G47389.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; Has 12 Blast hits
to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:17378652-17379374 FORWARD
LENGTH=723
Length=723
Score = 416 bits (225), Expect = 2e-115
Identities = 569/726 (78%), Gaps = 60/726 (8%)
Strand=Plus/Plus
Query 400 ATGATGATGTCTTTGTTAACAAATTCATGGTTGGGTTTGTTTCAACTTTTGGTCTCCACG 459
|||||||||| ||||||||||||| |||||||| ||||| |||| ||| || | |||
Sbjct 28 ATGATGATGTTTTTGTTAACAAATCCATGGTTGAATTTGTCTCAAGTTTGGGGATTCAC- 86
Query 460 A-CGGTGGCCGA---CGTCATTACGTTTTTCGTTGTTAGGGTTTTCTCTCCTCCTT-CCA 514
| || | |||| || |||| || || ||||| ||||||| ||| | || || |||
Sbjct 87 ATCGATATCCGATGCCGCCATTTCGATTCTCGTTCTTAGGGTCTTC-GTTCTTTTTACCA 145
Query 515 GAGGAG-TACTTGTCCGTGTGATGACT-ATGTGGTTCATTCACGGTGTTTTTCTGGGTAT 572
||| | || ||||||||||||||| | || |||||||||||||||||||||| ||||||
Sbjct 146 AAGGCGTTA-TTGTCCGTGTGATGA-TAATATGGTTCATTCACGGTGTTTTTCCGGGTAT 203
Query 573 GCTCGG-CGTTTTCGGTCTGGCGA-CAATAATTGTCGACAGCGATTTAGTGAAAATTTGC 630
|| ||| | || || ||||||| | ||||| ||| | ||| || |||| || ||||||||
Sbjct 204 GCCCGGTC-TTCTCAGTCTGGC-AGCAATAGTTGCCAACATCGTTTTAATGCAAATTTGC 261
Query 631 AATCC-TAGATGCATATGGGATCCCGGAATTACATCGAAGGCATTTGTCGTGAAGATCTC 689
|| | || |||| ||| | |||||||| || ||| || |||||| ||||||||||||
Sbjct 262 -GCCCTTCGACGCATGTGGAACCCCGGAATCACTTCGGAGACATTTGCCGTGAAGATCTC 320
Query 690 CAACGACGTCTATGGTGTGGA-ATGTA-CAATAGGATGGGCCTACACCGGTATCAAGCCA 747
||| |||||| |||| | || ||||| ||| ||||||| ||| |||||||||||||
Sbjct 321 TAACAACGTCTTTGGT-TTGAGATGTATGAAT-GGATGGGATTACTTCGGTATCAAGCCA 378
Query 748 AACTTTTTGCT--TCGTGCA--ATGGCACCGATATGGACTAATTGGTATCGGA-ATGTCG 802
|| |||| || | | ||| ||| |||||||| ||||||||||||||| || |||||
Sbjct 379 AA--TTTT-CTAAT-GGGCACTATGACACCGATACGGACTAATTGGTATC-GAGTTGTCG 433
Query 803 AGATTAT-AAAACTCAT-TACAGGAGCAACG-GGTTTATTCTATGTGATGTGGAGTTTCA 859
| || | |||||| | | ||||||||||| | ||| | |||||||||||||||||||
Sbjct 434 -GTTTCTCAAAACT-TTCTCCAGGAGCAACGAGCTTT-GTGTATGTGATGTGGAGTTTCA 490
Query 860 AACAAAGAATGCCAATAAGGCAT-CTGTATCACACTCGAGTAAGATGGCTTTT-AAAGAA 917
||||||||||||||||| ||||| | ||||||| ||||||||||||||| | |||||
Sbjct 491 AACAAAGAATGCCAATATGGCATACA-TATCACATTCGAGTAAGATGGCTAATGAAAGA- 548
Query 918 GGAACATATCATGTATTGT-AACATGAT-TGCGAGTAAGGCTTATGGAAAAGAAGCATCG 975
|||||||| ||||| || |||||| | | |||||||| ||||| |||| |||||||||
Sbjct 549 GGAACATAACATGT-TTAACAACATGTTAT-CGAGTAAGACTTATCGAAAGGAAGCATCG 606
Query 976 TTAAATTCACTTCTTC-GATTATGTCATCTTCAACATATGGCTCATAAATTTGCTTATGT 1034
|||||||||||| ||| | || ||||||||| | ||| ||||| ||||||| |||
Sbjct 607 TTAAATTCACTTTTTCAGTTTC-GTCATCTTC----T--GGCACATAATTTTGCTTTTGT 659
Query 1035 AATAAACTGCCA-CTGTAAAGTTTTGTATTGGCATTGTA-TGG-T-T-GTAATACCCATT 1089
||||| || ||| || ||||||||||||| ||||| | | | | ||||||| |||
Sbjct 660 AATAAGTTGGTTTCTG-AA-GTTTTGTATTGGCTTTGTACTTGCTATTGTAATACTAATT 717
Query 1090 GTTTAA 1095
|| |||
Sbjct 718 GTCTAA 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5