BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941624
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20680.1 | Symbols: TBL16 | TRICHOME BIREFRINGENCE-LIKE 16 |... 2691 0.0
> AT5G20680.1 | Symbols: TBL16 | TRICHOME BIREFRINGENCE-LIKE 16
| chr5:6998103-7001910 FORWARD LENGTH=2385
Length=2385
Score = 2691 bits (1457), Expect = 0.0
Identities = 1623/1703 (95%), Gaps = 12/1703 (1%)
Strand=Plus/Plus
Query 1 GACATATGCCTTGATCTAGTATGAACGAAAGTTTCTCTGGAACGCCAAGAAGCATGACCC 60
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 396 GACATATGCCTTGATCTAGTATGAACGAAACTTTCTCTGCAACGCCAAGAAGCATGACCA 455
Query 61 TCCATAGAAATAGGATGAAAAGAGGAGCCCTTAGACGAAGGGCTAGGGATATCTCTGTTA 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 TCCATAGATATAGGATGAAAAGAGGAGCCCTTAGACGAAGGGCTAGGGATATCTCTGTTA 515
Query 121 TGCTTGTTGTGCTTGTTTGTGCAACCGTCGTCATATGGACATGGGATAAAACTCCAACCT 180
|||||||||| |||||||||||||| || ||||||||||||||||||| |||||||||||
Sbjct 516 TGCTTGTTGTACTTGTTTGTGCAACTGTAGTCATATGGACATGGGATAGAACTCCAACCT 575
Query 181 CGGCCTTTCTTCCACCTGAAAGTCACTATCTAAAGCTGCAATCAGAAGAAAAGGTTGAGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 CGGCCTTTCTTCCACCTGAAAGTCACTATCTAAAGCTGCAATCAGAAGAAAAGGTTGAGA 635
Query 241 GACTACCTACTGCACTGAATACTGAAACTAAAGACATCTATTCATTAGCTACTCCATTTG 300
| |||||||||| |||||||||||||||||||||| ||| |||| ||||| ||||||||
Sbjct 636 AATTACCTACTGCGCTGAATACTGAAACTAAAGACAGCTACTCATCAGCTATTCCATTTG 695
Query 301 TAAACAAAGAGGGAAGCAAAGAGGATTCACCCGATAATAAAGATACagaagaagaagaag 360
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 696 TAAACAAAGAGGAAAGCAAAGAGGATTCATCCGATAATAAAGATACAGAAGAAGAAGAGG 755
Query 361 agaaacaagtggaagaagCTACTGTAAGTGATATGAATCAAGGAAAGACACCAACTATTG 420
|||||||||||||||||| |||||||||| ||| ||||| ||| |||| |||||| |||
Sbjct 756 AGAAACAAGTGGAAGAAGTTACTGTAAGTAATACGAATCGAGGGAAGATACCAACGATT- 814
Query 421 GAGAGAAAAAAGTAGAACAAGTGGAACATGAAGTTATTGCAAGTGAGCCAAAATATCAGA 480
|| |||||||| || | ||||||||||||||||||||||||||||||||||| ||
Sbjct 815 GA-AGAAAAAA--AG-----GGGGAACATGAAGTTATTGCAAGTGAGCCAAAATATCGGA 866
Query 481 AGACGCCAACTAGAGAGGAAATTAAATTAGAAAAGGTGAAACATGAGGTTGCTATTGGTG 540
|||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 867 AGACGCCAACTAGAGAAGATTTTAAATTAGAAAAGGTGAAACATGAGGTTGCTGTTGGTG 926
Query 541 ATGGCGAAGCTAAGAAGACAACACATATTAAAGAGACTAATTCAGATCCAGAGAGTAATA 600
| |||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 927 AGGGCGAAGCTACGGAGACAACACATATTAAAGAGACTAATTCAGATCCAAAGAGTAATA 986
Query 601 TTCTTGCAACAGATGAAGAGAGGACTGATGGTAGTACTTCCACAGCTCGCATCACGAATC 660
||||||||||||| ||||||||||||||| | ||||||| |||||||||||||||||||
Sbjct 987 TTCTTGCAACAGACGAAGAGAGGACTGAT-G--GTACTTCAACAGCTCGCATCACGAATC 1043
Query 661 AAGCTTGCAATTATGCGAAAGGGAAATGGGTTGTGGACAATCACCGTCCTTTGTATTCAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 AAGCTTGCAATTATGCGAAAGGGAAATGGGTTGTGGACAATCACCGTCCTTTGTATTCAG 1103
Query 721 GATCTCAATGCAAACAGTGGCTTGCTTCAATGTGGGCGTGCAGGTTGATGCAACGTACAG 780
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1104 GATCTCAATGCAAACAGTGGCTTGCTTCAATGTGGGCATGCAGGTTGATGCAACGTACAG 1163
Query 781 ACTTTGCCTTTGAAAGTTTAAGATGGCAACCTAAAGATTGCTCTATGGAAGAATTTGAGG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 ACTTTGCCTTTGAAAGTTTAAGATGGCAACCTAAAGATTGCTCTATGGAAGAATTTGAGG 1223
Query 841 GTTCCAAGTTCCTGAGAAGGATGAAGAACAAAACCCTAGCCTTTGTTGGAGACTCGTTGG 900
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 GTTCCAAGTTCTTGAGAAGGATGAAGAACAAAACCCTAGCCTTTGTTGGAGACTCGTTGG 1283
Query 901 GAAGACAACAGTTTCAATCTATGATGTGTATGATCACGGGAGGCAAAGAGAGGCTCGATG 960
|||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1284 GAAGACAACAGTTTCAGTCTATGATGTGTATGATCTCGGGAGGCAAAGAGAGACTCGATG 1343
Query 961 TCCTTGATGTGGGACCAGAATTTGGGTTCATAACTTCCGAAGGTGGAGCTCGTCCTGGTG 1020
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1344 TCCTTGATGTGGGACCAGAATTTGGGTTCATAACTCCCGAAGGTGGAGCTCGTCCTGGTG 1403
Query 1021 GCTGGGCTTACAGGTTCCCAGAAACTAACACAACGGTCCTATACCACTGGTCATCTACAC 1080
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 GTTGGGCTTACAGATTCCCAGAAACTAACACAACGGTCCTATACCACTGGTCATCTACAC 1463
Query 1081 TCTGCGACATAGAACCGCTCAACATCACTGACCCCGCAACTGAAAATGCTATGCATCTCG 1140
| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 1464 TGTGCGACATAGAACCGCTCAACATCACTGACCCCGCAACTGAACACGCTATGCATCTTG 1523
Query 1141 ATCGCCCACCAGCGTTTTTACGCCAATACCTTCATAAGATCAACGTCTTGGTAATGAACA 1200
|||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||
Sbjct 1524 ATCGCCCACCAGCGTTTTTACGCCAATACCTTCAAAAGATCGACGTATTGGTAATGAACA 1583
Query 1201 CAGGTCACCATTGGAACCGAGGGAAGCTCAACGGTAACAGATGGGTGATGCATGTTAATG 1260
||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct 1584 CAGGTCACCATTGGAACCGCGGGAAGCTCAACGGGAACAAATGGGTGATGCATGTTAATG 1643
Query 1261 GCGTTCCCAACACTAACAAGAAGCTAGCCGCTCTTGGGAACGCCAAGAATTTCACAATCC 1320
|||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||
Sbjct 1644 GCGTTCCCAACACTAACAGGAAGTTAGCTGCTCTTGGGAACGCCAAGAATTTCACAATCC 1703
Query 1321 ACAGCACAGTTAGTTGGGTTAACTCGCAACTCCCTCTCCATCCCGGTCTCAAGGCATTCT 1380
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1704 ACAGCACAGTTAGTTGGGTTAACTCACAACTCCCTCTCCATCCCGGTCTCAAGGCATTCT 1763
Query 1381 ACAGAAGCCTTTCACCGAGACATTTCGTGGGCGGGGAATGGAACACCGGAGGGAGCTGCA 1440
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1764 ACAGAAGCCTTTCACCGAGACATTTCGTGGGTGGGGAATGGAACACCGGAGGGAGCTGCA 1823
Query 1441 ATAACACAACCCCAATGTCTATCGGGAAAGAAGTTTTGCAAGAGGAGTCAAGCGATTACA 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1824 ATAACACAACCCCAATGTCTATCGGGAAAGAAGTTTTGCAAGAGGAGTCAAGCGACTACA 1883
Query 1501 GTGCGGGTCGTGCAGTGAAAGGTACAGGGGTTAAGCTTTTGGACATAACAGCCTTATCTC 1560
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1884 GCGCGGGTCGTGCAGTGAAAGGTACAGGGGTTAAGCTTTTAGACATAACAGCCTTATCTC 1943
Query 1561 ATATTAGAGACGAAGGTCACATATCACGGTTCAGTATCTCGGCTGCTCCGGGAGTTCAGG 1620
|||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 1944 ATATTAGAGACGAAGGTCACATATCACGGTTCAGTATCTCGGCTTCACGGGGAGTTCAGG 2003
Query 1621 ATTGCCTCCATTGGTGCTTGCCCGGTGTTCCTGATACATGGAACGAAATCCTTTTTGCAA 1680
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 2004 ATTGCCTCCATTGGTGCTTGCCCGGTGTTCCTGATACGTGGAATGAAATCCTTTTTGCAA 2063
Query 1681 TGATCTAAGTTTTCAAGTTACAG 1703
|||||||||||||||||||||||
Sbjct 2064 TGATCTAAGTTTTCAAGTTACAG 2086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84437316690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5