BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941626
Length=926
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20700.1 | Symbols: | Protein of unknown function (DUF581) ... 1463 0.0
> AT5G20700.1 | Symbols: | Protein of unknown function (DUF581)
| chr5:7005844-7007117 REVERSE LENGTH=1195
Length=1195
Score = 1463 bits (792), Expect = 0.0
Identities = 883/926 (95%), Gaps = 10/926 (1%)
Strand=Plus/Plus
Query 9 TCTCTCAAGATCATGCTTACCAAAAGAACCCATCCCATGATCGGAAAGATATCGGAGCTC 68
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 103 TCTCTCAAGATCATGCTTACTAAAAGAACCCATCCCATGATCGGAAAGATATCGGAGCTC 162
Query 69 CTCGTCGGTGTCAACCGATCCACGGCTGCTCCTTTCTTCGATGTCTTGATGACGAGCCCT 128
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 163 CTCGTCGGTGTCAACCGATCCACGGCGGCTCCTTTCTTCGACGTCTTGATGACGAGCCCT 222
Query 129 AAAAGCCCACTTGATTTCAAGATTCTCCCTCAGATATCTCAAAGAAACAGCTCAAAGAGA 188
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AAAAGCCCACTGGATTTCAAGATTCTCCCTCAGATATCTCAAAGAAACAGCTCAAAGAGA 282
Query 189 TTCTACGATGACAATCTTGGTGGCTCTGTTGGTCTAGGGATTGTAGCTGCACTCGAGAAC 248
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 283 TTCTACGATGACAATCTTGGTGGCTCTGTTGGTCTAGGGATTGTAGCCGCGCTCGAGAAC 342
Query 249 TCAAACACTCGTCGAATCACGAGCGTTTGTAGATCGGAACCGACCCAACCCGGCGGGTCT 308
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 343 TCAAACACTCGTCGAATCACGAGCGTTTGTAGATCGGAACCGAACCAACCCGGCCGGTCT 402
Query 309 GATCCGGTTCAGTTCATGAGCCATGGTGGAAGCACGGACGGAGAAGACGAGGAGATGTTC 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 GATCCGGTTCAGTTCATGAGCCATGGTGGAAGCACGGACGGAGAAGACGAGGAGATGTTC 462
Query 369 ATAATGGACGAGGAAGATTACACGTTGGTGACATGTCACCATGGGCCTAGTGGATCTTGT 428
|||||||||||||| |||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 463 ATAATGGACGAGGAGGATTACACGTTGGTGACATGCCACCATGGACCAAGTGGATCTTGT 522
Query 429 AGTACAAGGATTTATGACAAAGATGGATTTGAGTGTTTCTCAAGTAAGATCAACGATGAT 488
| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 523 AATACAAGGGTTTATGACAAAGATGGGTTTGAGTGTTTCTCAAGTAAGATCAACGATGAT 582
Query 489 CGTCGGGAAAGACTCTTCGTGGTCGATGTCGTTACGGAATCTCCAGAGAATTCGCCGGAG 548
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 583 CGTCGGGAAAGACTTTTCGTGGTCGATGTCGTTACGGAATCTCCAGAGAATTCGCCAGAG 642
Query 549 TTTCAGGGTTTGGGTTTCCTCAATTCATGTTACTTGTGCAGGAAGAAACTTCATGGTGAA 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 643 TTTCAGGGTTTGGGTTTCCTCAATTCATGTTACTTGTGCAGGAAGAAACTTCATGGTCAA 702
Query 609 GACATATTTATTTACAGAGGAGAAAAAGCGTTTTGCAGCACAGAGTGTCGATCAAGTCAT 668
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 703 GACATATTTATTTACAGAGGAGAAAAAGCATTTTGCAGCACAGAGTGTCGATCGAGTCAT 762
Query 669 ATAGCAAATGAAGAAAGGAAAGAGAGATGTAGATCAAAATTCTCAACCTCTCCTTACACC 728
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 ATAGCAAATGATGAAAGGAAAGAGAGATGTAGATCAAAATTCTCAACCTCTCCTTACACC 822
Query 729 GCCGGCCAAATTTTCTCCACCGGAGTTCTAGTGACTTAGCCGGAGTTCTTTCTACA-AT- 786
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 823 GCCGGCCAAATTTTCTCCACCGGAGTTCTAGTGACTTAGCCGGAGTTCTT-CTACTGATG 881
Query 787 A-TT-AGGCATATACGTATGGGGGGATCGGGGGTAAATAAAGTAATTAGGCATAAATAAT 844
| || | ||||| |||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 882 AGTTTATATATATATATATGGGGG-ATTGGGGGTAAATAAAATAATTAGGCATAAATAAT 940
Query 845 CGGCAAAGAGAAATAAATTAGCATATA-A-ATA--CTATGACATGTATGTCCATATTATG 900
||| ||||||||||||||||||||| | ||| ||| |||||||||||||||||||||
Sbjct 941 CGGGGCAGAGAAATAAATTAGCATATATATATATACTAAGACATGTATGTCCATATTATG 1000
Query 901 GTGGAAACGAAACAACATCGAGAAAT 926
||||||||||||||||||||||||||
Sbjct 1001 GTGGAAACGAAACAACATCGAGAAAT 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45260966447
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5