BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941640
Length=1540
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20870.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 2209 0.0
> AT5G20870.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr5:7079975-7081769 REVERSE LENGTH=1598
Length=1598
Score = 2209 bits (1196), Expect = 0.0
Identities = 1429/1542 (93%), Gaps = 14/1542 (1%)
Strand=Plus/Plus
Query 6 CACTTTTACAGAGAGATGGGTCGTCATGATACATACCAAAAGCTCATTTTCTTTTGCCTA 65
||||||| ||||| ||| || ||||||||||||||||||| |||||||| |||||||||
Sbjct 18 CACTTTT--AGAGAAATGAGTAGTCATGATACATACCAAAAACTCATTTTGTTTTGCCTA 75
Query 66 TCTATATTGTTACTTCACAACATATCGAAGAATGTGGAGGGCTTGGCATGTAACTGGGGT 125
|| ||||| || ||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 76 TCCATATTCTTTCTTCAAAACATATTGAAGAATGTGGAGGGCTTGGCATGTAACTGGGGT 135
Query 126 ACACAAGCCAGCCATCCACTACCACCAAACATAGTGGTGAAACTCCTTAGGGACAATGGG 185
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 ACACAAGCGAGCCATCCACTACCACCAAACATAGTGGTGAAACTCCTTAGGGACAATGGG 195
Query 186 TTCAACAAAGTTAAGCTATTTGAAGCTGACCCTGGTGCACTCAGAGCTCTTGGTAAATCC 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 TTCAACAAAGTTAAGCTATTTGAAGCTGACCCTGGTGCACTCAGAGCTCTTGGTAAATCC 255
Query 246 GGTATTCAAGTCATGGTCGGTATTCCCAACAATCTCTTGGAAACTATGGCTTCCACTGTT 305
||||||||||||||||||||||| |||||| ||||||||| ||||||||| |||||||||
Sbjct 256 GGTATTCAAGTCATGGTCGGTATCCCCAACGATCTCTTGGCAACTATGGCATCCACTGTT 315
Query 306 ACCAACGCAGAGCTCTGGGTTCAACAAAACGTCTCTCAGTATATCTCTAGATATGGAACT 365
|||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 316 ACCAACGCAGAGCTTTGGGTTCAACAAAACGTCTCTCAATACATCTCTAGATATGGAACC 375
Query 366 GACATAAGATATGTAGCTGTGGGGAATGAACCATTCTTGAAGACTTACAA-AGACAGATT 424
||||||||||||||||| ||||||||||| |||||||||||||| || || | |||||||
Sbjct 376 GACATAAGATATGTAGCGGTGGGGAATGAGCCATTCTTGAAGACCTATAATA-ACAGATT 434
Query 425 CGTCCGTTCAACATATCCGGCGCTGCAGAACGTTCAAGCAGCTCTGGTGAAAGCGGGTCT 484
|||||| ||||||||||| |||||||| ||||||||||||||||| || ||||| |||||
Sbjct 435 CGTCCGATCAACATATCCAGCGCTGCAAAACGTTCAAGCAGCTCTAGTTAAAGCTGGTCT 494
Query 485 TGGCCGGCAAGTCAAAGTGACGGTTCCTCTTAATGCCGACGTCTATGAATCCGGCGATGG 544
||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 495 TGGTCGGCAAGTCAAAGTGACGGTTCCTCTTAATGCCGACGTCTACGAATCCAGCGATGG 554
Query 545 TCTTCCTTCTTCTGGCGACTTCCGATCAGACATCAAAACCTTAATGGTCTCCATTGTTCG 604
|||||||||||| ||||| || ||||||||||| |||||||||||| |||| ||||||||
Sbjct 555 TCTTCCTTCTTCCGGCGATTTTCGATCAGACATAAAAACCTTAATGATCTCTATTGTTCG 614
Query 605 ATTCCTTGCTAATTCTGTCTCACCCATTACCTTCAACATCTACCCTTTCCTCTCTCTTAA 664
|||||| ||| |||| |||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 615 ATTCCTAGCTGATTCCGTCTCACCAATCACCTTCAACATCTACCCTTTCCTCTCTCTCAA 674
Query 665 CGCCGATCCAAATTTCCCGCGCGAATACGCCTTCTTCCCTAAA-GGAGGAGGCGGCGGCG 723
||| ||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| |
Sbjct 675 CGCTGATCCAAATTTCCCGCGCGAATACGCCTTCTTCCC-AAACGGAGGCGGCGGCGGTG 733
Query 724 GAGCAAAGCCCGTCGTCGACGGATCAATCTCTTACACGAACGTTTTCGACGCAAATTTCG 783
|||| |||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 734 GAGCTAAGCCCGTCGTCGATGGTTCAATCTCTTACACGAACGTCTTCGACGCAAATTTCG 793
Query 784 ACACTTTAGTCTCGGCGCTGGAGAAAAACGGATTTGACCCGAACAAAATTGAAATCATCG 843
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 794 ACACTTTAGTCTCGGCGCTGGAGAAGAACGGATTTGATGCGAACAAAATTGAAATCATCG 853
Query 844 TCGGAGAAGTCGGATGGCCAACCGACGGCGATCAAAACGCGAATCCGGCAATGGCTCAGA 903
|||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||
Sbjct 854 TCGGAGAAGTCGGATGGCCAACCGACGGTGATCAGAACGCAAATCCTGCAATGGCTCAGA 913
Query 904 GATTCAATCAAGGATTATTGAATCGTATCCTTCAAGGACAAGGAACGCCTCGTCGGAGAA 963
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 914 GATTCAATCAAGGGTTATTGAATCGTATCCTTCAAGGACAAGGTACGCCTCGCCGGAGAA 973
Query 964 CGGCGCCGGAAGTTT-TCTTATTCTCATTAGTAGACGAAGATGCCAAGAGCATTGATCCC 1022
|||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 974 TGGCGCCGGAAGTTTATAT-ATTCTCATTAGTAGACGAAGATGCCAAGAGCATTGATCCC 1032
Query 1023 GGAAAATTCGAACGACATTGGGGAATATTCTCTTATGACGGCACCGTTAAGTATCCTCTG 1082
|| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1033 GGGAAATTCGAAAGACATTGGGGAATATTCTCTTATGACGGCGCCGTTAAGTATCCTCTG 1092
Query 1083 AGTCTCGGTAACGGCCGTCCGTTGGTTCCGGCTAAAGGTGTTCGTTACTTGGCACGTGAG 1142
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1093 AGTCTCGGTAACGGCCGTCCGTTGGTTCCGACTAAAGGTGTTCGTTACCAGGCACGTGAG 1152
Query 1143 TGGTGCGTGCTCTCCACTCAAGCTGCGGGGAACGGTGC-G----T-GGCAGGCGCCTGCT 1196
|||||||||||||||||||| |||||||| |||||||| | | ||||||| |||||
Sbjct 1153 TGGTGCGTGCTCTCCACTCAGGCTGCGGGTAACGGTGCTGCCACTTGGCAGGCTTCTGCT 1212
Query 1197 ACGTACGCGTGTCAAAACGCCGACTGTACCTCGCTCGGGCCGGGTTCCTCTTGCGCTGCC 1256
||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 1213 ACGTACGCGTGTCAAAATGCCGACTGCACCTCGCTCGGGCCGGGTTCCTCCTGCGCCGCC 1272
Query 1257 TTAGACCCGACCGCGAACGCTTCTTACGCCTTCAACATGTATTTTCAAAAAATGGATCAT 1316
|| |||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1273 TTGGACCCGACCGCGAATGCTTCTTATGCGTTCAATATGTATTTTCAAAAAATGGATCAT 1332
Query 1317 CGTCGTGGCTCATGCGATTTTAACAATCTTGGGGTTCTTACTAAGATTGATCCGTCGAGT 1376
|||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct 1333 CGTCGTGGCTCATGTGATTTTAACAATCTTGGGGTTGTTACTAAGATAGATCCGTCAAGT 1392
Query 1377 GGCTCGTGTAGGTTTCCTATCGAAATCGACACGAGCAGGCAGCAGATGTTGAAGCCGCCA 1436
|| || ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1393 GGTTCCTGTAGGTTTCCTATCGAAATCGACACGAGCAGGCAGCAGATGTCGAATCCGCCA 1452
Query 1437 CCGAGGAATTCCGGTGCATCCGAAGCAAATTGTAGGTTGGCGGCAGCGGTGGCGATGGTA 1496
||||||||||| |||||||| |||||||| | |||||||| |||||| |||| |||||||
Sbjct 1453 CCGAGGAATTCAGGTGCATCTGAAGCAAAGTATAGGTTGGGGGCAGCCGTGGTGATGGTA 1512
Query 1497 ATCGGTTTGGTGTTTTCTAATTGATCCTTGGGGATGTTTTTT 1538
||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1513 ATCTGTTTGGTGTTCTCTAATTGATCCTTGGGGATGTTTTTT 1554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76003625130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5