BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941655
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21010.1 | Symbols: ATBPM5, BPM5 | BTB-POZ and MATH domain 5... 1986 0.0
AT3G43700.1 | Symbols: ATBPM6, BPM6 | BTB-POZ and MATH domain 6... 926 0.0
> AT5G21010.1 | Symbols: ATBPM5, BPM5 | BTB-POZ and MATH domain
5 | chr5:7136009-7138681 FORWARD LENGTH=1593
Length=1593
Score = 1986 bits (1075), Expect = 0.0
Identities = 1197/1257 (95%), Gaps = 3/1257 (0%)
Strand=Plus/Plus
Query 6 CGAATCTC-AAGGGAGATGTCTGGATCATTGATTCCGGGATCGAATCCGGATCGGGTTTT 64
||||| || || ||||||||| | |||| |||||| ||||||||||||||||||||||||
Sbjct 38 CGAATTTCAAACGGAGATGTCAGAATCAGTGATTCAGGGATCGAATCCGGATCGGGTTTT 97
Query 65 ATCTCCGACGAGTTCAAAATCGGTGACGCAGACGGTGAACGGGTCACATCAATTCGTGAT 124
|||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 98 ATCTCCGACGAGCTCGAAATCAGTGACGCAGACGGTGAACGGGTCGCATCAATTCGTGAT 157
Query 125 ACAAGGATACAGTTTAGCGAAAGGGATGGGTATAGGGAAGCACATAGCGAGTGATAATTT 184
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 TCAAGGATACAGCTTAGCGAAAGGGATGGGTATAGGGAAGCACATAGCGAGTGATAATTT 217
Query 185 TTCCGTCGGAGGTTATCAGTGGGGGATTTTCTTCTACCCGGACGGTAAGAATCCGGAGGA 244
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 218 CTCCGTCGGAGGTTATCAGTGGGGGATCTTCTTCTACCCGGACGGTAAGAATCCGGAGGA 277
Query 245 TAACTCGTCGTACGTCTCTGTTTTCATCGCATTGGCGAGTGAAGGAACTGAAGTTAGGGC 304
||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 278 TAATTCGTCGTACGTCTCTGTTTTTATCGCATTGGCCAGTGAAGGAACCGAAGTTAGGGC 337
Query 305 GCTTTTTGAGCTAGCTCTTGTTGACCAAAGTGGAAAGGGGAAACACAAGGTTCATAGCCA 364
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 338 GCTTTTCGAGCTAGCTCTTGTTGACCAAAGTGGAAAGGGGAAACATAAGGTTCATAGCCA 397
Query 365 TTTTGAGCGGTCACTTGATGGTGGACCTTATACACTCAAATACAGAGGAAGCATGTGGGG 424
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 398 TTTTGAGCGGTCACTCGATGGTGGCCCTTATACACTCAAATACAGAGGAAGCATGTGGGG 457
Query 425 ATACAAGCGTTTCTTCAGACGTTCCATTCTTGAGACATCTGACTACCTGAAAGACGATTG 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 ATACAAGCGTTTCTTCAGACGTTCCATTCTTGAGACATCTGACTACCTGAAAGACGATTG 517
Query 485 CTTGATAATCAATTGTACGGTTGGAGTTGTGGTTTCAGAAATACAATGCCCACAGTTACA 544
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 518 CTTGATAATCAATTGTACGGTTGGAGTTGTGGTTTCAGAAATACTCTGCCCACAGTTACA 577
Query 545 CTCTGTTCACGTCCCTGATTCAGAACTTGGATCACATTTTGGTGTTCTACTGGATAGCAT 604
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 578 CTCTGTTCACGTCCCTGATTCAGAACTTGGATCACATTTTGGAGTTCTACTGGATAGCAT 637
Query 605 GGAAGGTTCTGATGTAACTTTTGACATTGCTGGTGAGAAGTTTCTAGCTCATAAACTAGT 664
||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 638 GGAAGGTTCTGATATAACTTTTAACATTGCTGGCGAGAAGTTTCTAGCTCATAAACTAGT 697
Query 665 ACTGGCTGCTCGATCTCCATTTTTCAAATCTATGTTTTTCAGTGAGTTTGCTGCAGACAA 724
||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| ||||
Sbjct 698 ACTGGCTGCTCGATCTCCATTTTTCAAGTCTAAGTTTTTCAGTGAGTTTGAAGCAAACAA 757
Query 725 TACAGAGGTTACTATTAATGATTTGGAACCTAAGGTTTTTAAGGCTTTGCTACAATTCAT 784
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 758 TACAGAGGTTACTATTAACGATTTGGAACCTAAGGTTTTTAAGGCTTTGCTACAATTCAT 817
Query 785 GTATAAAGATTCTCTTCCCGAAGATGTGGAGCCTGCAACAACTCATACATTTGAGCGCTT 844
||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 818 GTACAAAGATTCTCTTCCGGAAGATGTGGAGCCTGCAACAGCTCATACATTTGAGCGCTT 877
Query 845 AAAGCTGTCAGAAATATACGAGACATTGATTGTAAAGGTTTTAGCAGCAGCAGACAAGTA 904
||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 878 AAAGCTGTCAGAAATATACGAAACATTGATTGTAAAAGTTTTAGCAGCAGCCGACAAGTA 937
Query 905 CGACCTGATTAGGCTCAGGTTGTTGTGTGAATCTCACATCTGCAAAGGCGTATCAATCAA 964
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 938 CGACCTGATTAGGCTCAGGTTGTTGTGTGAATCCCACATCTGCAAAGGCGTATCAGTCAA 997
Query 965 ATCTGTCGCCAAGATCTTAGCGTTGGCCGACAGATATAATGCTAAGGAACTAAA-GAACG 1023
||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 998 ATCCGTCGCGAAGATCTTAGCGTTGGCTGACAGATATAATGCTAAGGAACTAAAAGG-CG 1056
Query 1024 TTTGCCTTAAATTTACTGCCGAGAACCTAGCAGCTGTACTGGAGACAGACGCTTACCAAC 1083
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1057 TTTGCCTTAAGTTTACTGCCGAGAACCTAGCAGCTGTCCTGGAGACAGACGCTTACCAAC 1116
Query 1084 AGATGAAGGATGAATGTGTGACCCTCCAGTCCGAGCTTCTGAAGGCGGTGGCTGGTCACG 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 AGATGAAGGATGAATGTGTGACCCTCCAGTCCGAGCTTCTGAAGGCGGTGGCTGGTCACG 1176
Query 1144 AGGAAGGCAGTAACACTTCTGGTGGAGCAAAATCTCAGAGTGTGTGGGCCAAACTTTCTG 1203
||||||| ||||||| | |||| |||||||| |||||||| ||||||||| |||||||||
Sbjct 1177 AGGAAGGTAGTAACAGTACTGGAGGAGCAAAGTCTCAGAGCGTGTGGGCCCAACTTTCTG 1236
Query 1204 ACGGCGGTGGCGATACCACCAGCAGACATGTTAGACAACGAACCACCTAGAGCCTCA 1260
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1237 ACGGCGGGGGCGATACCACCAGCCGACATGTTAGACAACGAACCACCTAGAGCCTCA 1293
> AT3G43700.1 | Symbols: ATBPM6, BPM6 | BTB-POZ and MATH domain
6 | chr3:15601868-15603888 FORWARD LENGTH=1713
Length=1713
Score = 926 bits (501), Expect = 0.0
Identities = 954/1169 (82%), Gaps = 45/1169 (4%)
Strand=Plus/Plus
Query 65 ATCTCCGACGAGTTCAAAATCGGTGACGCAGACGGTGAACGGGTCACATCAATTCGTGAT 124
||| || || || |||| |||||||||||||||| ||||| || || |||||||||||
Sbjct 142 ATCACCAACAAGCTCAAGATCGGTGACGCAGACGACAAACGGATCGCACCAATTCGTGAT 201
Query 125 ACAAGGATACAGTTTAGCGAAAGGGATGGGTATAGGGAAGCACATAGCGAGTGATAATTT 184
|||||||||||||||||| ||||| || ||| ||||||| |||||||| |||||||||||
Sbjct 202 ACAAGGATACAGTTTAGCTAAAGGAATTGGTGTAGGGAAACACATAGCAAGTGATAATTT 261
Query 185 TTCCGTCGGAGGTTATCAGTGGGGGATTTTCTTCTACCCGGACGGTAAGAATCCGGAGGA 244
||||| ||||||||||| ||| || ||| ||||||| |||||||| ||||| |||||
Sbjct 262 CTCCGTAGGAGGTTATCAATGGACTATCTTCGTCTACCCTGACGGTAAAAATCCAGAGGA 321
Query 245 TAACTCGTCGTACGTCTCTGTTTTCATCGCATTGGCGAGTGAAGGAACTGAAGTTAGGGC 304
|||||| || ||||||||||| ||||||| ||||| |||||| | ||||||||||| ||
Sbjct 322 TAACTCTTCTTACGTCTCTGTGTTCATCGTTTTGGCTAGTGAATGTACTGAAGTTAGAGC 381
Query 305 GCTTTTTGAGCTAGCTCTTGTTGACCAAAGTGG-AAAGGGGAAACACAAGGTTCATAGCC 363
|||||||||||| |||||||||| |||||||| |||||| || || |||||||||||||
Sbjct 382 GCTTTTTGAGCTTTCTCTTGTTGATCAAAGTGGTAAAGGG-AAGCATAAGGTTCATAGCC 440
Query 364 ATTTTGAGCGGTCACTTGATGGTGGACCTTATACACTCAAATACAGAGGAAGCATGTGGG 423
||||| | || |||||||||||||| |||||||| || || ||||||||||| |||||||
Sbjct 441 ATTTTAATCGTTCACTTGATGGTGGTCCTTATACGCTTAAGTACAGAGGAAGTATGTGGG 500
Query 424 GATACAAGCGTTTCTTCAGACGTTCCATT-CTTGAGACATCTGACTACCTGAAAGACGAT 482
|||||||||||||||||||||| ||| || ||||||||||||||||| || |||||||||
Sbjct 501 GATACAAGCGTTTCTTCAGACGGTCC-TTGCTTGAGACATCTGACTATCTTAAAGACGAT 559
Query 483 TGCTTGATAATCAATTGTACGGTTGGAGTTGTGGTTTCAGAAATACAATGCCCACAGTTA 542
||||||| ||| |||||||| ||||||||||| ||||||||||| || ||||||| ||||
Sbjct 560 TGCTTGAAAATTAATTGTACAGTTGGAGTTGTCGTTTCAGAAATGCATTGCCCACGGTTA 619
Query 543 CACTCTG-TTCACGTCCCTGATTCAGAACTTGGATCACATTTTGGT--GTTCTACTGGAT 599
| ||| | |||| ||||| || ||||||||||||||||||||||| ||| ||||||
Sbjct 620 CTCTC-GATTCATGTCCCAGACTCAGAACTTGGATCACATTTTGGAAAGTTG--CTGGAT 676
Query 600 AGCATGG-AAGGTTCTGATGTAACTTTTGACATTGCTGGTGAGAAGTTTCTAGCTCATAA 658
| | | |||| || ||||| || |||||| |||| ||||||||||||| |||||||||
Sbjct 677 A-CTTTACAAGGCTCGGATGTCACATTTGACGTTGCCGGTGAGAAGTTTCAAGCTCATAA 735
Query 659 ACTAGTACTGGCTGCTCGATCTCCA-TTTTTCAAATCTATGTTTTTCAGTGAGTTT-GCT 716
| | || ||||||| ||||||| | ||||||| ||| ||||||| || | | | | ||
Sbjct 736 ATTGGTTTTGGCTGCACGATCTC-AGTTTTTCAGATCAATGTTTTACAAT-ACTCTAGCA 793
Query 717 GCAGA-CAATA-CAGAGGTTACT-ATTAATGATTTGGAACCTAAGGTTTTTAAGGCTTTG 773
| ||| ||| | | || || | | || | |||||||||||||||||||| ||||| |||
Sbjct 794 G-AGAACAACAGC-GACGT-AGTGATCAGCGATTTGGAACCTAAGGTTTTCAAGGCCTTG 850
Query 774 CTACAATTCATGTATAAAGATTCTCTTCCC-GAAGATGTGGAGCC-TGCAACAACTCATA 831
|||| ||||||||||||||||| || ||| | ||||||||| || | ||| |||||
Sbjct 851 TTACACTTCATGTATAAAGATTCCCT-CCCAGGAGATGTGGAACCATT-AACGGCTCATT 908
Query 832 CATTTGAGCGCTTAAAGCTGTCAGAAATATACGAGACATTGATTGTAAAGGTTTTAGCAG 891
||||||| | |||| || ||| |||||| | || ||| ||||||||||| || | ||||
Sbjct 909 CATTTGACCTATTAAGGCCGTCCGAAATAGATGATACACTGATTGTAAAGCTTCTGGCAG 968
Query 892 CAGCAGACAA-GTACGACCTGATTAGGCTCAGGTTGTTGTGTGAATCTCACATCTGCAAA 950
| || || || |||| | |||| ||||||||| || ||||||||||||||||||||||||
Sbjct 969 CTGCGGA-AATGTACAATCTGAGTAGGCTCAGATTATTGTGTGAATCTCACATCTGCAAA 1027
Query 951 GGCGTATCAATCAAATCTGTCG-CCAAGATCTTAGCGTTGGCCGACAGATATAATGC-TA 1008
||| |||| |||| || || | ||||||||||||| || |||||| ||||||||| |
Sbjct 1028 GGCATATCTATCAGCTCCGT-GTCCAAGATCTTAGCTTTATCCGACAAATATAATGCATC 1086
Query 1009 AGGAACTAAAGAA-CGTTTGCCTTAAATTT-ACTGCCGAGAACCTAGCAGCTGTACTGGA 1066
| ||||||| || ||||| ||||||| || ||||| || |||||||||||||| ||| |
Sbjct 1087 CG-AACTAAA-AAGCGTTT-CCTTAAAATTCACTGCAGAAAACCTAGCAGCTGTTCTGCA 1143
Query 1067 GACAGACGCTTACCAACAGATGAAGGATGAATGTGTGACCCTCCAGTCCGAGCTTCTGAA 1126
|||| | || || || | |||||||||| ||| | ||||||||| ||||| || ||
Sbjct 1144 GACAAAAGCATATGAAGATCTGAAGGATGACTGTCCAAACCTCCAGTCTGAGCTACTAAA 1203
Query 1127 GGCGGTGGCTGGTCACGAGGA-AGGCA-GTAACACTTCTGGTGGAGCAAAATCTCAGAGT 1184
|||||| |||||| | || || | || ||| || | || |||| ||| |||||||||
Sbjct 1204 GGCGGTCGCTGGTTATGACGACA--CAAGTAGCAG--C-GGAGGAGGAAAGTCTCAGAGT 1258
Query 1185 GTGTGGGC-CAAACTTTCTGACGGCGGTG 1212
|| ||||| ||| || ||| |||| ||||
Sbjct 1259 GTTTGGGCTCAA-CTCTCTAACGGTGGTG 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62600079615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5