BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941659
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21060.2 | Symbols: | Glyceraldehyde-3-phosphate dehydrogen... 1814 0.0
> AT5G21060.2 | Symbols: | Glyceraldehyde-3-phosphate dehydrogenase-like
family protein | chr5:7148978-7152876 REVERSE LENGTH=1443
Length=1443
Score = 1814 bits (982), Expect = 0.0
Identities = 1103/1160 (95%), Gaps = 14/1160 (1%)
Strand=Plus/Plus
Query 7 AGAAGAGAAGAAGGATGAAGAAGATTGCGGTGCTTCTCATGGGATGCGGAGGCGTTGGCC 66
|||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 118 AGAAGAGAGGAAGGATGAAGAAGATCCCGGTGCTTCTCATGGGCTGCGGAGGCGTTGGCC 177
Query 67 GCCACCTTCTTCAACACATCG-CGTCTTGCCGATCGCTTCACGCGAAAATGGGAGTTCAA 125
||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||| |
Sbjct 178 GCCACCTTCTTCAACACATCGTC-TCTTGCCGATCGCTTCACGCCAAAATGGGAGTTC-A 235
Query 126 T-TACGAGTTG-TTGGAGTATCTGACAGTAAATCTTTAGTTGCTCCAATGGATGTGCTCA 183
| |||| | || ||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 236 TATACG-GGTGATTGGAGTATGTGATAGTAAATCCTTAGTTGCTCCAATGGATGTGCTCA 294
Query 184 AAGAGGAACTGAATGATGAACTCTTGTCAGAAGTTTGCCGTATCAAATCATCTGGTTCGG 243
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
Sbjct 295 AAGAGGAACTGAATGATGAACTCTTGTCAGAAGTTTGCCTTATCAAATCAACTGGTTCTG 354
Query 244 CATTATCGAAGTTGGGTGCTTT------AGGTGGATATCGAGT-GTTCAATGCTTCCGAG 296
|||||||||||||||||||||| ||||||||||||||| | || ||| |||||||
Sbjct 355 CATTATCGAAGTTGGGTGCTTTGGAAAAAGGTGGATATCGAGTCG-TCCATGATTCCGAG 413
Query 297 TTAAGCAGGGAAACAGAAGAGATCGCAAAACTTCTTGGTAAATCTGCAGGCTTAGCTGTT 356
||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 414 TTAAGCACGGAAACAGAAGAGATTGCAAAACTTCTTGGTAAATCTACAGGCTTAGCTGTG 473
Query 357 GTGGATTGCTCAGCCAGCATGGAAACGATTGAAATATTGATCAAGGCAGTTGACTTGGGT 416
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 474 GTGGATTGCTCAGCCAGCATGGAGACGATTGAAATATTGATGAAGGCAGTTGACTTGGGT 533
Query 417 TGCTGTGTTGTCCTGGCAAATAAGAAGCCTCTTACTTCAACACTAGAACATTACGATAAA 476
|||||| ||||||||||||||||||||||| |||||||||| || ||||||||||| |||
Sbjct 534 TGCTGTATTGTCCTGGCAAATAAGAAGCCTGTTACTTCAACGCTGGAACATTACGACAAA 593
Query 477 TTGGCTTTGCATCCGCGATTCATCCGCCATGAATCTACTGTTGGTGCTGGACTTCCTGTC 536
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 594 TTGGCTTTGCATCCGCGATTCATCCGCCATGAATCTACTGTTGGTGCTGGTCTTCCTGTC 653
Query 537 ATCGCATCCTTGAACCGCATAATCTCGTCTGGAGATCCTGTTAATAAAATTGTCGGTAGT 596
||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||
Sbjct 654 ATCGCATCCTTGAACCGCATAATTTCGTCTGGAGATCCTGTTCATAGGATTGTCGGTAGT 713
Query 597 TTGAGCGGTACCTTGGGATATGTAATGAGTGAGCTTGAAGATGGCAAGCCTCTAAGCCAA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TTGAGCGGTACCTTGGGATATGTAATGAGTGAGCTTGAAGATGGCAAGCCTCTAAGCCAA 773
Query 657 GTTGTTCAAGCTGCCAAAACGCTGGGGTACACTGAACCAGATCCACGTGACGACCTCAGT 716
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 774 GTTGTTCAAGCTGCCAAAAAGCTGGGGTACACTGAACCAGATCCACGTGACGACCTCGGT 833
Query 717 GGCATGGATGTTGCTAGAAAGGGTTTGATTCTTGCTCGACTTCTTGGGAAGAGGATAATT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GGCATGGATGTTGCTAGAAAGGGTTTGATTCTTGCTCGACTTCTTGGGAAGAGGATAATT 893
Query 777 ATGGACAGCATAAAGATAGAGAGCCTGTATCCTGAAGAGATGGGACCTGGACTCATGTCT 836
||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 894 ATGGACAGCATTAAGATAGAGAGCTTGTATCCAGAAGAGATGGGACCTGGACTCATGTCT 953
Query 837 GTGGATGATTTCCTCCATAATGGAATAGTAAAACTTGATCAGAATATAGAGGAGAGAGTT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GTGGATGATTTCCTCCATAATGGAATAGTAAAACTTGATCAGAATATAGAGGAGAGAGTT 1013
Query 897 AAAAGAGCTTCATCAAATGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAGC 956
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 AAAAAAGCTTCATCAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAGC 1073
Query 957 GTTCAAGTTGGCATTCGAGAAGTTCCAAAAGATTCACCATTGGGACGATTAAGAGGCAGT 1016
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1074 GTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCTAAGAGGCAGT 1133
Query 1017 GACAATATAGTAGAGATATATAGCCGTTGCTACAAGGAGCAGCCTTTGGTGATTCAAGGT 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GACAATATAGTAGAGATATATAGCCGTTGCTACAAGGAGCAGCCTTTGGTGATTCAAGGT 1193
Query 1077 GCTGGAGCCGGGAACGACACGACTGCAGCCGGTGTTCTTGCAGACATCATCGATTTGCAG 1136
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1194 GCCGGAGCCGGGAACGACACAACTGCAGCCGGTGTTCTTGCAGACATCATCGACTTGCAG 1253
Query 1137 GATCTTTTTCACTGAGAGGA 1156
||||||||||||||||||||
Sbjct 1254 GATCTTTTTCACTGAGAGGA 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57881228385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5