BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941682
Length=697
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21430.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1020 0.0
> AT5G21430.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr5:7222226-7223621 FORWARD LENGTH=946
Length=946
Score = 1020 bits (552), Expect = 0.0
Identities = 646/693 (93%), Gaps = 0/693 (0%)
Strand=Plus/Plus
Query 3 TGTGTGAACCTTGGAGCTATGGCTTCCTTATCGACGATAACTCAACCGTCTTTAGTGCAC 62
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 51 TGTGTAAACCTTGGAGCTATGGCTTCCTTATCGACGATAACTCAACCATCTTTAGTCCAC 110
Query 63 ATTCCCGGCGAATCCGTCCTCCATCACGTACCAAGCACGTGCTCTTTCCCGTGGAAACCA 122
|||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 111 ATTCCCGGTGAATCAGTCCTCCATCACGTACCAAGCACGTGCTCTTTCCCATGGAAGCCA 170
Query 123 ACTATCACCACGAAGCGGATTATCTGTTCGCCTGCTAGGAACTCTGGTGAGGTTTCGGCA 182
||||||| |||||||||||||||||||||||| ||||||||||| | || || |||||
Sbjct 171 ACTATCAACACGAAGCGGATTATCTGTTCGCCGGCTAGGAACTCCAGCGAAGTATCGGCG 230
Query 183 GAAGCAGAAACCGAAGTTGGATCTAGCACCGCAGTGGATGAAGCACCGAAAGAGTCTGCG 242
|| ||||||||||||| ||||||||||||||| || ||||||||||||||||||||| |
Sbjct 231 GAGGCAGAAACCGAAGGTGGATCTAGCACCGCCGTTGATGAAGCACCGAAAGAGTCTCCA 290
Query 243 TCTTTAATATCCGCTCTCAACGTCGAACGCGCTCTTCGTGGCCTTCCGATTACAGATGTG 302
|||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 291 TCTTTAATATCCGCTCTCAACGTCGAACGCGCGCTACGTGGCCTTCCAATTACAGATGTT 350
Query 303 GATCACTATGGACGGCTTGGGATTTCCAGAAATTGCTCTTATGATCAGGTTAGAATTGGT 362
||||| ||||||||||||||||||| ||||||||| |||||||||||||||| |||||||
Sbjct 351 GATCATTATGGACGGCTTGGGATTTTCAGAAATTGTTCTTATGATCAGGTTACAATTGGT 410
Query 363 TACCAAGATAGAGTTAAGGAGCTAAAGGAACAAGGCCTAGACGAAGAACAACTCAAGAAC 422
||| |||| |||||||| ||| | ||||||||||| ||||| |||||||||||||||| |
Sbjct 411 TACAAAGAAAGAGTTAAAGAGTTGAAGGAACAAGGACTAGATGAAGAACAACTCAAGACC 470
Query 423 AAGATGGATCTTGTCAAAGAGTCATATACGATATTGTCGACCGTGGAAGAGAGAAGAATG 482
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 AAGATGGATCTTATCAAAGAGTCATATACGATATTGTCGACCGTGGAAGAGAGAAGAATG 530
Query 483 TACGATTGGAGTCTAGCCAGAAGCGAAAAAGCAGAGCGGTACGTGTGGCCATTTGAGGTT 542
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 531 TACGATTGGAGTCTAGCAAGAAGCGAAAAAGCAGAACGGTACGTGTGGCCATTTGAGGTT 590
Query 543 GACATCATGGAACCATCCAGGGAAGAGCCGCCTCCTCAGGAACCGGAAGATGTCGGACCA 602
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 591 GACATCATGGAACCATCCAGGGAAGAGCCACCTCCTCAGGAACCGGAAGATGTAGGACCA 650
Query 603 ACGAGGCTTTTGGGATACTTCATTGGGGCATGGCTTGTCCTTGGTGTTGCTCTTTCTGTT 662
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 651 ACGAGGATTTTGGGATACTTCATTGGAGCATGGCTTGTCCTTGGTGTTGCTCTTTCGGTT 710
Query 663 GCATTCAATCGTTAGCCAAATGTCGTTTCTTTA 695
|| |||||||||||||||||| |||||||||||
Sbjct 711 GCGTTCAATCGTTAGCCAAATTTCGTTTCTTTA 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33757346784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5