BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941690
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21960.1 | Symbols: | Integrase-type DNA-binding superfamil... 990 0.0
> AT5G21960.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr5:7258363-7259308 REVERSE LENGTH=946
Length=946
Score = 990 bits (536), Expect = 0.0
Identities = 652/705 (92%), Gaps = 20/705 (3%)
Strand=Plus/Plus
Query 4 tctctctctctctctGCATTTAGACATATGGACGCATCGCCC-AAGTACACAGGTGTACG 62
||||| || ||||||||||||||| ||||||| ||||| ||| |||||||||||||||||
Sbjct 72 TCTCTTTCCCTCTCTGCATTTAGAGATATGGATGCATC-CCCAAAGTACACAGGTGTACG 130
Query 63 GAAGAGGAAGTGGGGAAAATGGGTGGCTGAGATTCGTCTCCCCAACAGCCGTGAAAGGAT 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 131 GAAGAGGAAGTGGGGAAAATGGGTGGCTGAGATTCGTCTCCCCAACAGCCGTGACAGGAT 190
Query 123 CTGGTTAGGCTCTTTCGACTCAGCCGAGAAGGCTGCGCGTGCTTTCGACGCGGCTCTTTA 182
||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 191 CTGGTTAGGCTCTTTCGACTCTGCTGAGAAGGCGGCGCGTGCTTTCGACGCGGCTCTTTA 250
Query 183 CTGTCTTCGTGGCCCCGGAGCGCGTTTCAACTTCCCCGAGAATCCTCCGGAAATACCCGG 242
||||||||||||||||||||| || |||||||||||||| ||||||||||| || |||||
Sbjct 251 CTGTCTTCGTGGCCCCGGAGCACGCTTCAACTTCCCCGACAATCCTCCGGAGATTCCCGG 310
Query 243 CGGTCGTTCTCTGACGCCGCAGCAGATTCAGGTCGTAGCTAGCCGTTTCGCCTGCGAGGA 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 TGGTCGTTCTCTGACGCCGCAGCAGATTCAGGTCGTAGCTAGCCGTTTCGCCTGCGAGGA 370
Query 303 GGAGC-ACTTGCCACCGGAACAACATCATCCGTCTTCGCCACGTGGCGATAATAAGGCGG 361
||||| ||| ||||||||||||||||||||||| ||||||||||||| |||| | |
Sbjct 371 GGAGCTACTA-CCACCGGAACAACATCATCCGTCACCGCCACGTGGCGACCATAATACCG 429
Query 362 AGGAAGAAGGGATAATTTCGGCACGTGGGGAAATTAATAGTGGTAGTGGTGGGCCTACGT 421
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 AGGAAGAAGTGATAATTTCGGCACGTGGGGAAATTAATAGTGGTAGTGGTGGGCCTACGT 489
Query 422 TAGGGCAAGTTGGGGAAGATATTAACCACGAGGGTAATAGTAATAGCGACACGACGTCGT 481
||||||||||||||||||||| |||| ||||||||||||||||| | ||||| ||||||
Sbjct 490 TAGGGCAAGTTGGGGAAGATAATAACAACGAGGGTAATAGTAAT-G--ACACGTCGTCGT 546
Query 482 ATTTGCCTTTTATATGGGAGGAGGATAATCTTGTAGGTCCTCCTAACTCAGATCATGAGT 541
||| |||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 547 ATTGGCCTTTAATATGGGAGGAGGAGAATTTTGTAGGTCCTCCTAACTCAGATCATGAGT 606
Query 542 TTGGTTTTTTCACGGATGATTCAACCAATTTGTACTTCCC--CACA-CAACA-------- 590
| ||||||||||| |||||||||||||||||||||||||| |||| |||||
Sbjct 607 TCGGTTTTTTCACAGATGATTCAACCAATTTGTACTTCCCGACACAACAACAACAACAAC 666
Query 591 -TCAGCTCTCGTCTGATTTTTACTATGATGGAGCTTGTGAAGATGATTTCTCTCATTACA 649
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ATCAGCTCTCGTCTGATTTTTACTATGATGGAGCTTGTGAAGATGATTTCTCTCATTACA 726
Query 650 ACATTAACCTTTGGAATTTCTGAGATCCATTTTTT-GGTGATCTT 693
| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 727 ATATTAACCTTTGGAATTTCTGAGATCCATTTTTTTGGTGATCTT 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33556410196
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5