BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941700
Length=472
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22044.1 | Symbols: | pseudogene of zinc finger (C3HC4-type... 424 5e-118
AT5G41430.1 | Symbols: | RING/U-box superfamily protein | chr5... 316 9e-86
AT5G41450.1 | Symbols: | RING/U-box superfamily protein | chr5... 261 4e-69
> AT5G22044.1 | Symbols: | pseudogene of zinc finger (C3HC4-type
RING finger) protein | chr5:7299989-7300324 FORWARD LENGTH=336
Length=336
Score = 424 bits (229), Expect = 5e-118
Identities = 297/331 (90%), Gaps = 0/331 (0%)
Strand=Plus/Plus
Query 122 TAATCAACCTCCTACGGAACTAGGTCTTGAGACTCACCAAAACCATCATCCACAGCCTAT 181
||| |||||| ||| ||||| | ||||||||| ||||||||||||||||||| |||
Sbjct 6 TAAACAACCTTTTACATAACTAAGCCTTGAGACTAACCAAAACCATCATCCACAACCTCC 65
Query 182 GACTCAACAAGACATTGAAACCGGACATCTAACGCCACCACATCCTCAACAAGACATCAA 241
| |||||||||||| ||||||||||||||||||| ||| | ||||||||||||||||
Sbjct 66 GTCTCAACAAGACACTGAAACCGGACATCTAACGGCACTTGAAGCTCAACAAGACATCAA 125
Query 242 AACCGGATATATGATGCAGATCGAGAAAATAGAGTTTAAAGGTATTGAAGAAGAAGGATT 301
||||| |||||||||||| || |||||||||||||||||||||| ||||| ||||||||
Sbjct 126 AACCGAATATATGATGCATATTAAGAAAATAGAGTTTAAAGGTATCGAAGAGGAAGGATT 185
Query 302 TGATCAGATTTGTTGTTCAATTTGTCTTGAAGAGTTTGAAGATGGCCATGATATTATCCG 361
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 186 TGATGAGATTTGTTGTTCAATTTGTCTTGAAGAATTTGAAGATGGCCATGATATTATCCG 245
Query 362 TATAAAGATGTGTAGACATGTTTTTCATCGTCTTTGTATTGATTCTTGGCTGAAACAGAA 421
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 246 TATAAATATGTGTAGACATGTTTTTCATCGCCTTTGTATTGACTCTTGGCTGAAACAGAA 305
Query 422 TCAAAGCTGCCCCAATTGTCGATGTTTCTAA 452
||||||||| || ||||| |||||||| |||
Sbjct 306 TCAAAGCTGTCCGAATTGCCGATGTTTTTAA 336
> AT5G41430.1 | Symbols: | RING/U-box superfamily protein | chr5:16586119-16586604
REVERSE LENGTH=486
Length=486
Score = 316 bits (171), Expect = 9e-86
Identities = 250/287 (87%), Gaps = 10/287 (3%)
Strand=Plus/Plus
Query 167 TCATCCACAGCCT-ATGACTCAACAAGACATTGAAACCGGACATCTAACGCCACCACATC 225
||| || |||||| | | |||| ||||||| ||||||||||||||||| ||| | |||
Sbjct 201 TCAGCCTCAGCCTCA-GCCTCAGCAAGACAATGAAACCGGACATCTAATGCCGCTTCATT 259
Query 226 CTCAACAAGACA-TCAAAACCGGATATATGATGCA--GATCGAGAAAATAGAGTTTAAAG 282
|||||| ||| | | |||| ||| |||| | ||| ||||||| |||| ||||||||||
Sbjct 260 CTCAACTAGA-ATTTAAAATCGGTTATA-G-GGCATCGATCGAGGAAATGGAGTTTAAAG 316
Query 283 GTATTGAAGAAGAAGGATTTGATCAGATTTGTTGTTCAATTTGTCTTGAAGAGTTTGAAG 342
||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| ||||
Sbjct 317 ATATTGAAAAAGAAGGATTTGATGAGATTGGTTGTTCAATTTGTCTTGAAGAGTTAGAAG 376
Query 343 ATGGCCATGATATTATCCGTATAAAGATGTGTAGACATGTTTTTCATCG-TCTTTGTATT 401
|||||||||| |||||||||||||||| ||||||||||||||| ||||| || |||||||
Sbjct 377 ATGGCCATGAGATTATCCGTATAAAGAAGTGTAGACATGTTTTCCATCGTTC-TTGTATT 435
Query 402 GATTCTTGGCTGAAACAGAATCAAAGCTGCCCCAATTGTCGATGTTT 448
|||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 436 GATTCTTGGCTGAAACAGAATCGAAGCTGCCCAAATTGTCGATGTTT 482
> AT5G41450.1 | Symbols: | RING/U-box superfamily protein | chr5:16588600-16589094
REVERSE LENGTH=495
Length=495
Score = 261 bits (141), Expect = 4e-69
Identities = 273/334 (82%), Gaps = 19/334 (6%)
Strand=Plus/Plus
Query 126 CAACCTCCTACGGAACTAGGTCTTGAGACTCACCAAAA-CCATCATCCA-CAGCCT-ATG 182
||||||||||||||| ||| || |||||| |||||||| | ||||||| || ||| ||
Sbjct 130 CAACCTCCTACGGAAATAGCTCGTGAGACACACCAAAATTC-TCATCCACCA-CCTGATC 187
Query 183 A-C-TCAACAAGACATTGAAACCGGACATCTAACGCCACCACATCCTCAACAAGACATCA 240
| | ||||||||||||||| || |||||| |||||| || || ||||||||| ||||
Sbjct 188 AGCTTCAACAAGACATTGAGACTGGACATGTAACGCTGCCTCAGCCTCAACAAAACATTG 247
Query 241 AAACCGGATATATG--AT-G---CA-G-ATCGAGAA-AATAGAGTTTAAAGGTATTGAAG 291
| |||||||||| || | || | | ||| || |||||||||||| || | ||
Sbjct 248 CAGTCGGATATATGACATGGATCCATGAAACGACAATTTTAGAGTTTAAAGATA-T-AA- 304
Query 292 AAGAAGGATTTGATCAGATTTGTTGTTCAATTTGTCTTGAAGAGTTTGAAGATGGCCATG 351
||||||||| || |||||| |||| |||| ||||||||||||||||||||||||||||
Sbjct 305 AAGAAGGATCCAATAAGATTTTTTGTCCAATATGTCTTGAAGAGTTTGAAGATGGCCATG 364
Query 352 ATATTATCCGTATAAAGATGTGTAGACATGTTTTTCATCGTCTTTGTATTGATTCTTGGC 411
| || || |||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 365 AGATAATTCGTATAAATATGTGTAGACATGTTTTTCATCGTTTTTGTATTGATCCTTGGC 424
Query 412 TGAAACAGAATCAAAGCTGCCCCAATTGTCGATG 445
| || ||||||| || |||||| |||||||||||
Sbjct 425 TCAATCAGAATCTAACCTGCCCGAATTGTCGATG 458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22454663709
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5