BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941711
Length=1394
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22130.2 | Symbols: PNT1 | mannosyltransferase family protei... 1626 0.0
> AT5G22130.2 | Symbols: PNT1 | mannosyltransferase family protein
| chr5:7337158-7340052 REVERSE LENGTH=1962
Length=1962
Score = 1626 bits (880), Expect = 0.0
Identities = 1012/1076 (94%), Gaps = 7/1076 (1%)
Strand=Plus/Plus
Query 323 TTCTGATTTACTGGTCGGCTGGTTTGTCCATAAGATTTTGAGAGAACGTAAGGTGCCTGA 382
||| ||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||
Sbjct 584 TTCAGATTTACTGGTCGGCTGGTTTATCCATAAGATTTTGAAACAACGTAAGGTGCCTGA 643
Query 383 GAAGATATGTACATATTCTGTTATGGTTTGGCTTCTCAATCCGTTTACATTCACTATTGG 442
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 644 GAAGATATGTACATATTCTGTAATGGTTTGGCTTTTCAATCCGTTTACATTCACTATTGG 703
Query 443 AACCAGAGGGAACTGTGAACCCATCGTTTGTGCCATGATATTATGGATCA-TCATCT-CT 500
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 704 AACCAGAGGGAACTGTGAACCCATCGTTTGTGCCATGATATTATGGATCATTC-TCTGC- 761
Query 501 CTTATGCGAGGTAATCTGTCACAAGCTGCATTTTGGTATGGGCTTGTTGTGCATTTCAGG 560
|| |||| ||||||| ||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 762 CTAATGCAAGGTAATTTGTTACAAGCTGCATTTTGGTACGGGCTTGTTGTGCATTTCAGG 821
Query 561 GTCTATCCTATTATTTATGCGTTACCAATCATCCTGGTTCTCGATTCCCAGATATTTAGA 620
|||||||||||||| ||||| || ||||||||||||||||| ||| ||||| ||||||||
Sbjct 822 GTCTATCCTATTATCTATGCCTTGCCAATCATCCTGGTTCTTGATACCCAGGTATTTAGA 881
Query 621 TCTGGTCAAAAGCCTGCTCTCGAGGATTGGAATACCGGTCAGGCCAAGACACCTATCAGC 680
|||||||||||||| ||||| | ||||||||||||||||||||||||||||| |||
Sbjct 882 TCTGGTCAAAAGCCGGCTCTTTTGTATTGGAATACCGGTCAGGCCAAGACACCTGCCAGT 941
Query 681 AACACGGAGAGAAAAACATTCCTCTTTAATCTCTCT-ACCACCTTGAAAAGTTTATTTTC 739
|||| ||||||||||||||||||||| ||||||| | |||||||||||||||||||||||
Sbjct 942 AACATGGAGAGAAAAACATTCCTCTTCAATCTCT-TGACCACCTTGAAAAGTTTATTTTC 1000
Query 740 CAGGGAGAGAATCATGTTTGCTTTGATATCCGGGGGAGTTTTTCTAGCTTGCAATGCTGT 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 CAGGGAGAGAATCATGTTTGCTTTGATATCCGGGGGAGTTTTTCTAGCTTGCAATGCTGT 1060
Query 800 TTCTTTCTATTTTTATGGACACGAGTTCCTGCACGAGGCTCTCTTATATCATCTGACTCG 859
||| ||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||
Sbjct 1061 TTCCTTCTATTTTTATGGACAAGAGTTCCTGCATGAGGCTCTCTTATATCACCTTACTCG 1120
Query 860 GACAGATCCAAGGCACAACTTCTCCATCTACTTCTATCACATATATCTTCACTATGAGCG 919
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 AACAGATCCAAGGCACAACTTCTCCATCTACTTCTATCACATATATCTTCACTATGAGCG 1180
Query 920 CCAGTTTTCAGCTGTGGAGAAGCTTATCTCGTTTTTACCTCAGTTTACAGTACAGTTTGC 979
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1181 CCAGTTTTCAGCTGTGGAGAAGCTTATCTCGTTTTTACCCCAGTTTACAGTACAGTTTGC 1240
Query 980 TCTAGTCTTCTCCTTCTCTCAGGATCTAGTGTTCTGCATCTTTCTCCAAACCGTTGCATT 1039
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 TCTAGTCTTCTGCTTCTCCCAGGATCTAGTGTTCTGCATCTTTCTCCAAACCGTTGCATT 1300
Query 1040 TGTGGCTTTCAATAAGGTGATAACCGCACAGTACTTTGTGTGGTTCTATTGCCTGCTACC 1099
||| ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 1301 TGTCACTTTCAATAAGGTGATAACTGCGCAGTACTTTGTGTGGTTTTATTGCCTGCTACC 1360
Query 1100 CCTGATTCTACCATGGAGCCGTATGAAGCTGAAATGGGAAGGCTTGTTATGCATCATTAT 1159
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1361 CCTGATTCTACCATGGAGCCATATGAAGCTGAAATGGGAAGGCTTGTTATGCATCATTAT 1420
Query 1160 GTGGATCGGAGCTCAGACACATTGGCTCTTATGGGGATACATGCTCGAATTCAAGGGCAT 1219
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1421 GTGGATCGGAGCTCAGACACATTGGCTCTTATGGGGATACATGCTCGAGTTCAAGGGCGT 1480
Query 1220 TAATGTCTTTTTACCGCTATGGATCGCGAGTTTGCTGTTTCTGGCTGCAAACACCTTCGT 1279
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TAATGTCTTTCTACCGCTATGGATCGCGAGTTTGCTGTTTCTGGCTGCAAACACCTTCGT 1540
Query 1280 CCTCGTCAGAATCATACAACACCATCGATTCTCTCCTCTCTTCAGACGGTATGAATCGTC 1339
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1541 CCTTGTCAGAATCATACAACGCCATCGATTCTCTCCTCTCTTCAGACGGTATGAATCGTC 1600
Query 1340 CTCCTCTTCAAAGAATGTTACAAAACTTGACTGAGCCTAATCAAA-GTTCTTTGCT 1394
||| |||||||| |||||||| ||| ||||||| ||| |||| ||| ||||||
Sbjct 1601 CTCTTCTTCAAACAATGTTACCAAAGAAGACTGAGACTAGCCAAAAGTTATTTGCT 1656
Score = 516 bits (279), Expect = 3e-145
Identities = 312/328 (95%), Gaps = 1/328 (0%)
Strand=Plus/Plus
Query 1 AAGATTCAGAAGATAA-CGATATGTCTCGTGAATTAGAGAACACTGATGATGAACCACCG 59
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 201 AAGATTCAGAAGATAAGCGATATGTCTCGTGAATCAGAGAACACTGATGATGAACCATCG 260
Query 60 AAATGGATGAAGTTTCGTTCTCTGCTGGTATTCTCGATGCTTCTGCGTATGTTTTTGATT 119
|||||||||||||| ||||| || ||||| |||||||||||||||||| |||||||||||
Sbjct 261 AAATGGATGAAGTTCCGTTCACTACTGGTGTTCTCGATGCTTCTGCGTGTGTTTTTGATT 320
Query 120 GTTTATGGAGAATGGCAAGATGCTCATATGGAGGTACGGTACACTGACGTTGATTACATT 179
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 321 GTTTATGGAGAATGGCAAGATGCTCATATGGAGGTCCGGTACACTGATGTTGATTACATT 380
Query 180 GTATTTTCCGATGCTGCGTCGTTGATGGCATCCGGTGAGTCTCCTTACAAGAGAACCACA 239
||||||||||||||||| ||||||||||||||||| || |||||||||||| ||||||||
Sbjct 381 GTATTTTCCGATGCTGCTTCGTTGATGGCATCCGGAGAATCTCCTTACAAGCGAACCACA 440
Query 240 TACCGTTATTCGCCTTTGCTTGCCCTTCTTCTGACCCCTAATTCCTTCTTTCATCGGTCA 299
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 441 TACCGTTATTCGCCTTTGCTCGCGCTTCTTCTGACCCCTAATTCCTTCTTTCATCGGTCA 500
Query 300 TGGGGAAAGTTTCTCTTCTCAGCTTCTG 327
||||||||||||||||||||||||||||
Sbjct 501 TGGGGAAAGTTTCTCTTCTCAGCTTCTG 528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68674345560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5