BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941712
Length=1139
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22140.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 1803 0.0
AT3G44190.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 918 0.0
> AT5G22140.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr5:7340122-7341906 REVERSE LENGTH=1509
Length=1509
Score = 1803 bits (976), Expect = 0.0
Identities = 1086/1139 (95%), Gaps = 7/1139 (1%)
Strand=Plus/Plus
Query 4 GAGCTTGAATC-GCTAAAAATGGAAGGGATTGAATCTGGTTCTAGACAAGGAAAGAGAGT 62
||||||||||| | ||||||||||||| ||||||||||| |||| |||||||||||||||
Sbjct 232 GAGCTTGAATCTG-TAAAAATGGAAGGCATTGAATCTGGGTCTAAACAAGGAAAGAGAGT 290
Query 63 GGTGGTGATCGGCGGCGGAATCGCCGGCTCACTCGCCGCGAAATTGCTTCAGTTCGATGC 122
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GGTTGTGATCGGCGGCGGAATCGCCGGCTCACTCGCCGCGAAATTGCTTCAGTTCGATGC 350
Query 123 TGATGTCACACTCATCGATCCGAAGGAGTACTTTGAGATTACATGGGCAAGTTTGAGATC 182
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 351 TGAAGTCACACTCATCGATCCGAAGGAGTATTTTGAGATTACATGGGCAAGTTTGAGATC 410
Query 183 CAAGGTGGAGCCTAAGTTTGCTGAAAGAACAGTGATTAACCACAAGAGTTACTTGAAACA 242
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 411 CATGGTGGAGCCTAAGTTTGCTGAGAGAACAGTGATTAACCACAAGAGTTACTTGAAACA 470
Query 243 AGGTCGTGTTGTAACTTCTCCGGCGATCAATATCACAGAGACTGATGTTATGACTGAAGA 302
||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 471 AGGCCGTCTTGTAACTTCTCCGGCGATCAATATCACAGAGAGTGATGTTATGACTGAAGA 530
Query 303 TGGATCTGTGATTGGATATGATTATCTTGTTATTGCTACAGGTCACAATGACTTGTTCCC 362
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 531 TGGATCTGTGATTGGATATGATTATCTTGTGATTGCTACAGGTCACAATGACTTGTTCCC 590
Query 363 TAAAACTAGACAAGAGAAGCTGTCACATTACCAAGCTGAATATGAGAAGATCAAATCTTC 422
|||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||
Sbjct 591 TAAAACTAGACAAGAGAAGCTGTCACATTATCAATCTGAATATGAGAAGATAAAATCTTC 650
Query 423 TGGATCAGTTTTGATTGTTGGTGGAGGTCCATCTGGTGTGGAGCTTGCTGCGGAAATCGC 482
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 651 TGGATCAGTTTTGATTGTTGGTGGAGGTCCATCTGGTGTGGAGCTAGCTGCGGAAATCGC 710
Query 483 GGTTGATTTTCCGGAGAAGAAGGTTACTCTGGTGCATAAAGGACCAAGATTGCTTGAATT 542
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 711 GGTTGATTTCCCGGAGAAGAAGGTTACTCTGGTGCATAAAGGACCAAGATTGCTTGAGTT 770
Query 543 TGTTGGACAAAAAGCTGCTGATAAAGCATCTGACTGGTTAGAATCAAAGAAAGTGGAAGT 602
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 771 TGTTGGACAAAAAGCTGCTGATAAAGCATCTGATTGGTTAGAATCAAAGAAAGTGGAAGT 830
Query 603 GATATTGAATCAATCTGTGGATTTGAGTTCAGCTTCAGATGGAAACAAAACATACCGGAC 662
|||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 831 TATATTGAACCAATCTGTGGATTTGAGTTCAGCTTCGGATGGAAACAAAATATACCGGAC 890
Query 663 TTCAGGAGGAGAAACTATACATGCAGAT-TGTCATTTCCTCTGTGTTGGGAAACCTTTGT 721
||||||||||||||||||||| |||||| | ||| |||||||||||||||||||||||||
Sbjct 891 TTCAGGAGGAGAAACTATACACGCAGATAT-TCACTTCCTCTGTGTTGGGAAACCTTTGT 949
Query 722 CTTCTCAATGGCTCAATGGAACTGTTCTGAAAGATAGCTTGGATGGTAAAGGAAGGGTTA 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 950 CTTCTCAATGGCTCAATGGAACTGTTCTGAAAGATAGCTTGGATGGTAAAGGAAGAGTCA 1009
Query 782 TGGTCGATGAGTACTTGCGAATTAGGGGTCGAAGCAATGTATTCGCCATTGGAGATATCA 841
||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 1010 TGGTCGATGAGTACTTGCGGATTAGAGGTCGAAGCAATGTATTCGCTGTTGGAGATATCA 1069
Query 842 CTAATATCCCGGAGATGAAACAAGGATATATAGCGGAGACTCATGCTAATGTGGTTGTGA 901
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1070 CTAATATCCCTGAGATGAAACAAGGATATATAGCAGAGACTCATGCTAATGTCGTTGTGA 1129
Query 902 AAAACATAAAGGTAATGATGTCGAGC-GGTAAAAAGAAGAAGATGTCGACTTACAAGCCT 960
| |||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 1130 AGAACATAAAGGTAATGATGTC-AGGTGGGAAAAAGAAGAAGATGTCGACTTACAAGCCC 1188
Query 961 GGTCCAGAGATGGCCATTGTATCTTTAGGAAGAAAGGACTCGGTGGCTCAGTTTCCGTTT 1020
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 GGTCCAGAGTTGGCCATTGTATCTTTAGGAAGAAAGGACTCGGTGGCTCAGTTTCCGTTT 1248
Query 1021 GTAACAGTTGTTGGTTGCCTCCCTGGTTTGATCAAGTCAAAGGATCTGTTTGTGGGAAAG 1080
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1249 GTGACAGTTGTTGGTTGCCTCCCTGGTTTGATCAAGTCTAAGGATCTGTTTGTGGGGAAG 1308
Query 1081 ACGAGGAAGGCAAGAGGACTAAATCCTAAACTTGTATAAGGTTGAGTCCTATTTGTGTT 1139
|| |||||||||||||| |||||||||||||||||||||| |||| ||||||| |||||
Sbjct 1309 ACAAGGAAGGCAAGAGGCCTAAATCCTAAACTTGTATAAGTTTGATTCCTATT-GTGTT 1366
> AT3G44190.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr3:15901797-15903608 REVERSE LENGTH=1517
Length=1517
Score = 918 bits (497), Expect = 0.0
Identities = 892/1080 (83%), Gaps = 38/1080 (4%)
Strand=Plus/Plus
Query 55 AAGAGAGTGGTGGTGATCGGCGGCGGAATCGCCGGCTCACTCGCCGCGAAATTGCTTCAG 114
||||||||| | || ||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct 240 AAGAGAGTGATTGTTATCGGCGGCGGAATCGCCGGCTCTCTCGCTTCGAAATTTCTTCAA 299
Query 115 TTCGATGCTGATGTCACACTCATCGATCCGAAGGAGTACTTTGAGATTACATGGGCAAGT 174
|||||| | ||| |||| ||||| |||||||||||||| |||||||||| |||||||||
Sbjct 300 TTCGATTCCGATCTCACCCTCATTGATCCGAAGGAGTATTTTGAGATTATTTGGGCAAGT 359
Query 175 TTGAGATCCAA-GGTGGAGCCTAAG--TTTGCTGAAAGAACAGTGATTAACCACAAG-AG 230
|| || | ||| ||| ||||| || |||||||||||| | ||||| ||||||||| ||
Sbjct 360 TTAAGGT-CAATGGTAGAGCC--AGCTTTTGCTGAAAGATCGGTGATAAACCACAAGAAG 416
Query 231 TTACTTGA-AACAA-GGTCGTGTTGTAACTTCTCCGGCGATCAATATCACAGAGACTGAT 288
|| || | || || ||||||||||| |||||||| ||| | ||||||||||| || |||
Sbjct 417 -TA-TTTACAA-AATGGTCGTGTTGTGACTTCTCCAGCGGTTAATATCACAGACACCGAT 473
Query 289 GTTATGACTGAAGATGGATC-TGTGATTGGATATGATTATCTTGTTATTGCTACAGGTCA 347
||| |||| | ||||| || ||| |||| ||||||||||||||||||||||| |||||
Sbjct 474 GTTTTGACCGCGGATGG-TCTTGTCTTTGGGTATGATTATCTTGTTATTGCTACTGGTCA 532
Query 348 CAATGACT-TG-TTCCCTAAAACTAGACAAGAGAAGCTGTCACATTACCAAGCTGAATAT 405
|||||| | || || ||||||||||| ||||||||| | || || |||||| | ||| ||
Sbjct 533 CAATGA-TGTGCTT-CCTAAAACTAGGCAAGAGAAGTTATCTCAATACCAAACAGAACAT 590
Query 406 GAGAAGATCAAATCTTCTGGA-TCAG-TTTTGATTGTTGGTGGAGGTCCATCTGGTGTGG 463
||||||||||| || ||| || || | || ||||||||||||||||||| || |||||||
Sbjct 591 GAGAAGATCAAGTCATCT-GAGTC-GATTCTGATTGTTGGTGGAGGTCCGTCGGGTGTGG 648
Query 464 AGCTTGCTGCGGAAATCGCGGTTGATTTTCCGGAGAAGAAGGTTACTCTGGTGCATAAAG 523
|||| |||||||| || || || ||||| || ||||| ||||||||| | || || || |
Sbjct 649 AGCTCGCTGCGGAGATAGCTGTCGATTTCCCTGAGAAAAAGGTTACTATAGTACACAATG 708
Query 524 GACCAAGATTGCTTGAATTTGTTGGACAAAAAGCTGCTGATAAAGCATCT-GACTGGTTA 582
|||| |||||||| ||||||||||| || |||||||| || || |||| | |||||| |
Sbjct 709 GACCGAGATTGCTGGAATTTGTTGGTCAGAAAGCTGCAGACAAGGCAT-TAGACTGGAT- 766
Query 583 GAA-TCAAAGAAAGTGGAAGTGATATTGAATCAATCTGTGGATTTGAGTTCAGCTTCAGA 641
||| || |||| ||| |||||||||||||| ||| || ||||||||||||||||||||
Sbjct 767 GAAGTCCAAGAGAGTTGAAGTGATATTGAACCAAAGGGTTGATTTGAGTTCAGCTTCAGA 826
Query 642 TGGAAACAAAACATACCGGACTTCAGGAGGAGAAACTATACATGCAGATTGTCATTTCCT 701
||| | ||||| ||||| || || || ||||| || ||||| || |||||||| |||||
Sbjct 827 TGGGAGTAAAACGTACCGAACATCGGGTGGAGAGACGATACACGCGGATTGTCACTTCCT 886
Query 702 CTGTGTTGGGAAACCTTTGTCTTCTCAATGGCTCAATGGAACTGTTCTGAAAGATAGCTT 761
|||| ||| |||||||||||||| ||||||| || ||||||||||||||||||| |||
Sbjct 887 CTGTACTGGAAAACCTTTGTCTTCAGAATGGCTAAAAGGAACTGTTCTGAAAGATAACTT 946
Query 762 GGATGGTAAAGGAAGGGTTATGGTCGATGAGTACTTGCGAATTAGGGGTCG-AAGCAATG 820
|||||| ||||||||| |||||||||||||||||||| || ||| |||||| ||| ||||
Sbjct 947 GGATGGCAAAGGAAGGCTTATGGTCGATGAGTACTTGAGAGTTAAGGGTCGCAAG-AATG 1005
Query 821 TATTCGCCATTGGAGATATCACTAATATCCCGGAGATGAAACAAGGATATATAGCGGAGA 880
||||||| ||||| ||||| ||| || ||||||||||||||||||| || || || ||||
Sbjct 1006 TATTCGCTATTGGTGATATTACTGATGTCCCGGAGATGAAACAAGGCTACATTGCTGAGA 1065
Query 881 CTCATG-CTAATGTGGTTGTGAAA-AACATAAAGGTAATGATGTC-GAGCGGTAAAAAGA 937
|| | || ||| | | ||| ||||||||| | ||||||| | | || || |||
Sbjct 1066 AACACGCCT-CTGTAGCT-ACAAAGAACATAAAGTTGTTGATGTCTG-GTGGGAACGAGA 1122
Query 938 AGAAGATGTCGACTTACAAGCCTGGTCCAGAGATGGCCATTGTATCTTTAGGAAGAAAGG 997
|||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||
Sbjct 1123 AGAAGATGTCGACTTACAAGCCTGGTCCGGACATTGCCATAATATCTTTAGGAAGAAAGG 1182
Query 998 ACTCGGTGGCTCAGTTTCCGTTTGTAACAGTTGTTGG-TTGCCTCCCTGGTTTGATCAAG 1056
||||||| |||||||| || || | ||||| | || |||| | ||||||||||||||
Sbjct 1183 ACTCGGTTGCTCAGTTCCCATTCATGACAGTC-TCGGGTTGCATACCTGGTTTGATCAAA 1241
Query 1057 TCAAAGGATCTGTTTGT-GGGAAAGACGAGGAAGGCAAGAGGACTAAATCCTAAACTTGT 1115
|| |||||||||||||| ||||| |||||||||||||||||| || ||||||| |||||
Sbjct 1242 TCTAAGGATCTGTTTGTCGGGAA-GACGAGGAAGGCAAGAGGTCTGGATCCTAACCTTGT 1300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55873206585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5