BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941717

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22190.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   128    5e-29


> AT5G22190.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G22160.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:7354164-7354688 FORWARD LENGTH=354
Length=354

 Score =  128 bits (69),  Expect = 5e-29
 Identities = 91/102 (89%), Gaps = 0/102 (0%)
 Strand=Plus/Plus

Query  328  CAACAAGGAATCCAGGTAACGGATGTAAAGTCTCTCTCCACACAGTCAAATCGCGTCTCC  387
            ||||||||| ||||| ||||  ||||||| ||||| |||||||| |||||||||||||||
Sbjct  47   CAACAAGGAGTCCAGCTAACAAATGTAAATTCTCTTTCCACACAATCAAATCGCGTCTCC  106

Query  388  TCCGCGGAGATAAGCTTCTATCCGAGTCATCCATTCCTGATT  429
            ||||||||||||||||| | ||||||||| ||| ||||||||
Sbjct  107  TCCGCGGAGATAAGCTTATCTCCGAGTCAGCCACTCCTGATT  148



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22605366150


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5