BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941731
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22290.1 | Symbols: anac089, NAC089 | NAC domain containing ... 1459 0.0
> AT5G22290.1 | Symbols: anac089, NAC089 | NAC domain containing
protein 89 | chr5:7375923-7377644 REVERSE LENGTH=1290
Length=1290
Score = 1459 bits (790), Expect = 0.0
Identities = 945/1019 (93%), Gaps = 13/1019 (1%)
Strand=Plus/Plus
Query 27 AGGCTACGGCGGCGTCAG-TAGAAGCGTCGACGGTGTTTCCTGGGTTTAAGTTTTCGCCG 85
||| |||||||||||| | | ||||||||||||||||||||||||||||| || ||||||
Sbjct 175 AGGATACGGCGGCGTC-GATGGAAGCGTCGACGGTGTTTCCTGGGTTTAAATTCTCGCCG 233
Query 86 ACTGATGTTGAGCTGATTTCGTATTACTTGAAGCGGAAGATGGATGGCTTGGAGAGGTCC 145
|| ||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 234 ACGGATGTGGAGTTGATTTCGTATTACCTGAAGCGGAAGATGGATGGCTTGGAGAGGTCC 293
Query 146 GTTGAGATTATACCGAACGC-TGAGATTTACAATTTCGAGCCTTGGGATTTGCCCGATAA 204
|||||| |||||||| || | |||||||||||||||||||||||||||||| ||||||||
Sbjct 294 GTTGAGGTTATACCGGAC-CTTGAGATTTACAATTTCGAGCCTTGGGATTTACCCGATAA 352
Query 205 GTCGATTGTGAAATCTGATAGCGAATGGTTCTTCTTCTGTGCCCGTGGGAAAAAGTATCC 264
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 353 GTCGATTGTGAAATCTGATAGCGAGTGGTTCTTCTTCTGTGCGCGTGGGAAAAAGTATCC 412
Query 265 ACATGGGTCACAGAACAGGAGAGCAACGAAGATGGGATATTGGAAAGCAACTGGGAAAGA 324
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 413 ACATGGTTCACAGAACAGGAGAGCAACGAAGATGGGATACTGGAAAGCAACTGGGAAAGA 472
Query 325 GCGTGATGTGAAGTCTGGTTCTGAGGTCATTGGAACAAAGAGGACGCTTGTTTTCCATAT 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 GCGTGATGTGAAGTCTGGTTCTGAGGTCATTGGAACAAAGAGGACGCTTGTTTTCCATAT 532
Query 385 TGGTCGTGCACCAAAAGGTGAAAGAACTGACTGGATTATGCACGAGTACTGCATGAAAGG 444
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 533 TGGTCGTGCACCAAAAGGCGAAAGAACTGACTGGATTATGCACGAGTACTGCGTGAAAGG 592
Query 445 AGTTTCTCTGGATGATGCTATGGTTGTTTGCCGGGTTAGGAGGAACAAAAAATATCAA-A 503
||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
Sbjct 593 AGTATCTCTGGATGATGCTATGGTTGTTTGCCGGGTTAGGAGGAACAAAGAATA-CAATA 651
Query 504 GTGGTATGAGTCAGAAGGCACCCGAGCCAAAATT-AGCACCCGAGAAGCGCGCCATCTTG 562
|||||| |||||||||||||| ||||||| || | || ||||||||| || | |
Sbjct 652 GTGGTACAAGTCAGAAGGCACCAAAGCCAAA-TTCATCAGCCGAGAAGCATGCGAAAGTC 710
Query 563 CAAAATGGTGCTACTAGTTCAGGGAGCCCGTCTGATTGGGACAACTTGGTTGATTTTTAC 622
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 CAAAATGGCGCTACGAGTTCAGGGAGCCCGTCTGATTGGGACAACTTGGTTGATTTTTAC 770
Query 623 CTAGCAGGTGAATCAGAGGAGAAACTGCTCTGG-GAGATGGCAGAATCATCAGAAAATCT 681
|||||||||||||||| ||||||||| ||| | ||||||||||| ||||||||||||||
Sbjct 771 CTAGCAGGTGAATCAGGGGAGAAACTACTC-GCTGAGATGGCAGAGTCATCAGAAAATCT 829
Query 682 ACAGGTGCATAATGACGAGGATTTATTTGCGGATATCCTAAGAGACGAAATCATCAATCT 741
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 830 ACAGGTGGATAATGACGAGGATTTCTTTGCGGATATCCTAAGAGACGAAATCATCAATCT 889
Query 742 TGATGAAGCGGTGATGACCGGTAACACACCAAACGAAATCCCAACACTAGAATCAGCATC 801
||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||||
Sbjct 890 CGATGAAGCGGTGATGACAGGGAACACACCAAACGAAGTGCCAACACTAGAATCAGCATC 949
Query 802 AATGGAGATAAGGGTACTTCCCTTACCAAACATGATAGACAAACAAATGTCATCACTGTT 861
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 950 AATGGAGATAAGGGTACTTCCTTTACCAAACATGATAGACAAACAAATGTCATCACTGTT 1009
Query 862 AGAGGAAAGACCATCACAAAAGATGGAAGGAACAGATACCATGGAATCATTGTCGAACTG 921
|||||||||||||||||| |||| | |||||| ||| ||| |||||||||||||| |||
Sbjct 1010 AGAGGAAAGACCATCACAGAAGAAGAAAGGAAAAGACGCCACGGAATCATTGTCGAGCTG 1069
Query 922 CTTCGTGGGTATATACTCGATCAAGTCAGTGAACCGAG-CACGATGGGATGTTATTATAT 980
|||||||||| ||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct 1070 CTTCGTGGGTTTATACTCGATCAAATCAGTGAACA-AGGCACGATGGGATGTTATTATAG 1128
Query 981 GTGTAGTAGCTCTGATAGCAATGTTGTTTTATCTAGAATAATAAGGTTTATGGAAGTAG 1039
||||||| ||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 1129 GTGTAGTGGCTCTGATAGCAATGTTGTTTTATCTAGAATAAGA-GGCTTATGGAAGTAG 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51188595793
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5