BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941736
Length=1420
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22330.1 | Symbols: ATTIP49A, RIN1 | P-loop containing nucle... 2305 0.0
> AT5G22330.1 | Symbols: ATTIP49A, RIN1 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein | chr5:7390796-7394194
REVERSE LENGTH=1730
Length=1730
Score = 2305 bits (1248), Expect = 0.0
Identities = 1367/1425 (96%), Gaps = 6/1425 (0%)
Strand=Plus/Plus
Query 2 ATCACAGTAATTGTA---GACGGAGATGGAGAAAGTAAAGATTGAAGAAATTCAGTCCAC 58
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 ATCAAAGTAATTGTAGTTGACGGAGATGGAGAAAGTAAAGATTGAAGAAATTCAGTCCAC 158
Query 59 CGCTAAGAAACAGCGGATTGCTACTCACACCCATATCAAAGGTCTTGGCCTTGAGCCAAC 118
|||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 159 CGCTAAGAAACAACGGATTGCTACTCACACCCATATCAAAGGCCTTGGCCTCGAGCCAAC 218
Query 119 CGGTGTTCCTATAAAATTGGCGGCTGGATTTGTTGGTCAACTTGAGGCTAGAGAGGCAGC 178
||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 219 TGGTATCCCTATAAAATTGGCAGCTGGATTTGTTGGTCAACTTGAGGCTAGAGAGGCAGC 278
Query 179 TGGTCTTGTAGTGGACATGATTAAGCAGAAGAAAATGGCGGGTAAGGCTCTTTTACTTGC 238
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 279 TGGTCTTGTAGTTGACATGATTAAGCAGAAGAAAATGGCGGGCAAGGCTCTTTTGCTTGC 338
Query 239 TGGACCTCCTGGAACCGGGAAAACAGCATTGGCTCTTGGAATTTCTCAAGAGCTGGGAAG 298
||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 339 TGGACCTCCTGGAACTGGGAAAACAGCTTTGGCTCTTGGAATCTCTCAAGAGCTGGGAAG 398
Query 299 CAAGGTTCCATTCTGTCCAATGGTTGGATCTGAGGTTTACTCATCAGAGGTCAAGAAAAC 358
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 399 CAAGGTTCCATTCTGTCCAATGGTTGGATCTGAGGTTTACTCATCAGAGGTTAAGAAAAC 458
Query 359 AGAGGTTCTCATGGAGAATTTTAGACGTGCCATCGGTCTACGTATCAAGGAAACCAAAGA 418
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 459 AGAGGTTCTCATGGAGAATTTTAGACGTGCCATTGGTCTACGTATCAAGGAAACCAAAGA 518
Query 419 AGTCTATGAAGGGGAGGTCACCGAGCTGTCACCAGAAGAAACTGAAAGCCTCACTGGAGG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AGTCTATGAAGGGGAGGTCACCGAGCTGTCACCAGAAGAAACTGAAAGCCTCACTGGAGG 578
Query 479 CTATGGTAAAAGCATCAGCCATGTTGTCATTACACTCAAGACAGTCAAAGGAACCAAACA 538
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 579 TTATGGTAAAAGCATCAGCCATGTTGTAATTACACTCAAGACAGTCAAAGGAACCAAACA 638
Query 539 TCTGAAGTTGGACCCCACTATATACGATGCCTTGATTAAGGAAAAGGTAGCTGTAGGTGA 598
|||||| ||||| |||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 639 TCTGAAATTGGATCCCACTATCTATGATGCCTTGATTAAGGAAAAGGTAGCTGTAGGAGA 698
Query 599 TGTTATCTATATCGAAGCAAACAGTGGAGCTGTCAAACGGGTAGGTAGAAGTGATGCTTT 658
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 TGTAATCTATATCGAAGCAAACAGTGGAGCTGTCAAACGGGTAGGTAGAAGTGATGCTTT 758
Query 659 TGCCACTGAATTCGATCTGGAAGCAGAAGAATATGTTCCACTTCCCAAAGGAGAGGTTCA 718
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 759 TGCCACTGAATTTGATCTGGAAGCAGAAGAATATGTTCCACTTCCCAAAGGAGAGGTCCA 818
Query 719 CAAAAAGAAAGAAATAGTGCAGGATGTCACACTCCAAGATCTGGACGCAGCAAATGCTCG 778
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 819 CAAAAAGAAAGAGATAGTGCAGGATGTCACACTCCAAGATCTGGATGCAGCAAATGCTCG 878
Query 779 ACCTCAAGGTGGCCAGGATATACTTTCTTTGATGGGCCAAATGATGAAACCCCGGAAGAC 838
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 879 ACCTCAAGGTGGCCAGGATATACTTTCTTTGATGGGCCAAATGATGAAACCGCGGAAGAC 938
Query 839 TGAGATCACTGATAAGCTTAGGCAAGAAATTAACAAGGTTGTGAATCGTTATATAGATGA 898
||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 939 TGAGATCACTGATAAGCTTCGGCAAGAAATTAACAAGGTTGTGAACCGATATATAGATGA 998
Query 899 AGGTGTGGCGGAGCTTGTTCCTGGAGTTCTATTTATCGATGAGGTTCATATGCTTGATAT 958
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 999 AGGTGTGGCAGAGCTTGTTCCAGGAGTTCTATTTATTGATGAGGTTCATATGCTTGATAT 1058
Query 959 GGAGTGCTTTTCATACTTGAACCGTGCTCTTGAGAGCTCATTATCCCCCATAGTGATATT 1018
||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1059 GGAGTGCTTCTCATACTTGAACCGTGCTCTTGAGAGCTCATTATCTCCGATAGTGATATT 1118
Query 1019 TGCAACAAATAGAGGTGTTTGCAACGTAAGAGGGACTGATATGCCCAGCCCCCATGGAGT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 TGCAACAAATAGAGGTGTTTGCAACGTAAGAGGGACTGATATGCCCAGCCCCCATGGAGT 1178
Query 1079 TCCTATTGACCTATTGGATCGATTGGTCATTATCCGGACTCAAATCTATGATCCCTCTGA 1138
|||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1179 CCCTATTGATCTATTAGATCGATTGGTTATCATCCGGACTCAAATCTATGATCCCTCTGA 1238
Query 1139 AATGATACAGATTATAGCCATTCGTGCGCAAGTTGAAGAACTAACGGTGGATGAAGAATG 1198
|||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1239 AATGATCCAGATTATAGCCATTCGTGCGCAAGTTGAAGAATTAACCGTGGATGAAGAATG 1298
Query 1199 CTTGGTTCTACTTGGGGACATTGGGCAAAGAACTTCACTAAGGCACGCTGTGCAGCTCCT 1258
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1299 CTTGGTTCTACTTGGGGAGATTGGGCAAAGAACTTCACTAAGGCACGCTGTGCAGCTTCT 1358
Query 1259 GTCTCCTGCCAGCATTGTGGCGAAAATGAATGGACGTGACAATATTTGCAAGGCTGATAT 1318
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1359 GTCTCCTGCCAGCATTGTAGCGAAAATGAATGGCCGTGACAATATTTGCAAGGCTGATAT 1418
Query 1319 AGAGGAAGTAACATCACTCTACTTGGATGCCAAATCTTCAGCAAAGCTTTTGCATGAGCA 1378
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1419 AGAGGAAGTAACATCACTCTACTTGGATGCTAAATCTTCAGCAAAGCTTTTGCATGAGCA 1478
Query 1379 ACAAGAAAAATACATCTCAT-A-A-GAACACTAGTCGCACATTTT 1420
|||||||||||||||||||| | | |||||||| |||||||||||
Sbjct 1479 ACAAGAAAAATACATCTCATGAGAAGAACACTAATCGCACATTTT 1523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69979559730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5