BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941740
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22360.1 | Symbols: ATVAMP714, VAMP714 | vesicle-associated ... 1133 0.0
> AT5G22360.1 | Symbols: ATVAMP714, VAMP714 | vesicle-associated
membrane protein 714 | chr5:7404004-7405765 REVERSE LENGTH=1152
Length=1152
Score = 1133 bits (613), Expect = 0.0
Identities = 675/705 (96%), Gaps = 4/705 (1%)
Strand=Plus/Plus
Query 6 ATTGAAGATTCTCCGATGGCGATTGTATATGCGGTTGTGGCGAGAGGTACGGTGGTATTA 65
|||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||
Sbjct 97 ATTGAAGATTCTCCGATGGCGATTGTCTATGCTGTTGTAGCGAGAGGTACCGTGGTATTA 156
Query 66 GCTGAATTCAGCGCCGTTACGGGAAACACAGGCGCCGTGGTGCGACGGATCCTCGAGAAG 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 GCTGAATTCAGCGCCGTTACGGGAAACACAGGCGCCGTGGTGCGACGGATCCTCGAGAAG 216
Query 126 CTTTCGCCGGAAATCGCCGATGAAAGACTTTGTTTCTCTCAAGACCGTTACATCTTCCAT 185
||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 217 CTTTCACCGGAAATCTCCGATGAAAGACTTTGTTTCTCTCAAGATCGTTATATCTTCCAT 276
Query 186 ATTCTTAGATCTGATGGTCTTACCTTTCTCTGTATGGCCAATGATACCTTTGGAAGGAGG 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 ATTCTTAGATCTGATGGTCTTACCTTTCTCTGTATGGCCAATGATACCTTTGGAAGGAGG 336
Query 246 ATTCCATTTTCGTATTTGGAAGATATTCATATGAGGTTTATGAAAAACTATGGAAAAGTG 305
|||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||
Sbjct 337 GTTCCATTTTCGTATTTGGAAGAGATTCATATGAGATTCATGAAAAACTATGGCAAAGTG 396
Query 306 GCGCATCATGCTCCAGCTTATGCAATGAATGATGAATTCTCAAGGGTTTTGCATCAGCAG 365
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 GCTCATAATGCTCCAGCTTATGCAATGAATGATGAATTCTCAAGGGTTTTGCATCAGCAG 456
Query 366 ATGGAGTTCTTCTCTAGTAATCCTAGTGTTGATACTCTTAATCGTGTTAGAGGAGAAGTC 425
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 457 ATGGAGTTCTTCTCTAGTAATCCTAGTGTTGATACTCTCAATCGTGTTAGAGGAGAAGTC 516
Query 426 AGTGAGATTCGATCGGTCATGGTAGAGAACATTGAGAAAATAATGGAGAGAGGTGATAGG 485
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 517 AGTGAGATTCGATCGGTCATGGTAGAGAACATTGAGAAGATAATGGAAAGAGGTGATAGG 576
Query 486 ATTGAGCTTCTTGTTGATAAAACAGCAACAATGCAAGATAGCGCGTTTCACTTCAGGAAG 545
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 577 ATTGAGCTTCTTGTTGATAAAACAGCAACAATGCAAGATAGCTCGTTTCACTTCAGGAAG 636
Query 546 CAATCTAAGCGTCTTCGCCGAGCTCTTTGGATGAAAAATGCTAAGCTCCTGGTACT-GTT 604
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 637 CAATCTAAGCGCCTTCGCCGAGCTCTTTGGATGAAAAATGCTAAGCTCCTGGT-CTTGTT 695
Query 605 GACATGCTTGATAGTTCTTGT-GCTCTACATAATAATCGCATCTTTTTGCGGAGGAATCA 663
|||||||||||||||| || | ||| |||||||||||||||||||| |||||||||||||
Sbjct 696 GACATGCTTGATAGTT-TTCTTGCTGTACATAATAATCGCATCTTTCTGCGGAGGAATCA 754
Query 664 CTCTACCGTCATGCAGATCTTAAATTCTGGCGGCCTTATCTAAGG 708
|| |||| |||||||||||||||| ||||||||||||||||||||
Sbjct 755 CTTTACCATCATGCAGATCTTAAAATCTGGCGGCCTTATCTAAGG 799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34309922401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5