BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941744
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22400.1 | Symbols: | Rho GTPase activating protein with PA... 2145 0.0
> AT5G22400.1 | Symbols: | Rho GTPase activating protein with
PAK-box/P21-Rho-binding domain | chr5:7422716-7425467 REVERSE
LENGTH=1867
Length=1867
Score = 2145 bits (1161), Expect = 0.0
Identities = 1348/1436 (94%), Gaps = 21/1436 (1%)
Strand=Plus/Plus
Query 5 AAATCTGAAGTGCGCCATGACTGAAGtccttcactttccttcatctccaagcgc-t-tc- 61
||||||||| |||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 119 AAATCTGAA--GCGCCATGACTGAAGTTCTTCACTTTCCTTCATCTCCAAGCGCTTCTCA 176
Query 62 -tc--cttcatcttcttcttcttctccttcaccttcttctttatcttacgcctctcgctc 118
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TTCATCTTCTTCTTCTTCTTCTTCTCCTTCACCTTCTTCTTTATCTTACGCCTCTCGCTC 236
Query 119 caatgcgtctctcttGATTAGCTCTGACCATAACCGGAGAAACCCAGTTCCTGGATTCGA 178
|||||| |||||||||||||||||||||| |||||||||||||||||| || |||||||
Sbjct 237 TAATGCGACTCTCTTGATTAGCTCTGACCACAACCGGAGAAACCCAGTTGCTAGATTCGA 296
Query 179 TCAAGATGTTGACTTTCATGGCTCAATCGAAGAACAAGATTTGAGAAGAAGACGGAGCGG 238
|||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| |
Sbjct 297 TCAAGATGTTGACTTTCATGCCTCAATCGAAGAACAAGATTT--G-AGAAGACGGAGCAG 353
Query 239 TA---ATGTCGGAGAAGAAGACGATGGTGGGGAAGATCAGATTTCGTTGTTGGCTCTTCT 295
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TACCGATGGAGGAGAAGAAGACGATGGTGGGGAAGATCAGATTTCGTTGTTGGCTCTTCT 413
Query 296 TGTCGCTATTTTCAGGAGATCTTTGATTTCTTGCAAGAGTAATCGGAGAGAGCTCTGTAG 355
||| || ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 414 TGTTGCCATTTTCAGGAGATCTTTGATTTCTTGCAAGAGTAACCGGAGGGAGCTTTGTAG 473
Query 356 CATGGAGATTGGATGGCCTACCAATGTCCGACACGTGGCGCACGTTACCTTCGATCGTTT 415
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 474 CATGGAGATTGGATGGCCTACCAATGTCAGACACGTGGCGCACGTTACCTTTGATCGTTT 533
Query 416 CAATGGCTTCTTGGGTTTGCCTGTTGAATTCGAGCCTGAAGTTCCAAGAAGAGCTCCAAG 475
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 534 CAATGGCTTCTTGGGTTTGCCTGTTGAATTCGAGCCTGAAGTTCCTAGAAGAGCTCCAAG 593
Query 476 CGCCAGTGCAACAGTCTTTGGGGTATCAACCGAATCAATGCAATTATCATATGATTCAAG 535
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 594 CGCCAGTGCAACAGTCTTTGGGGTATCAACCGAATCAATGCAATTATCGTATGATTCAAG 653
Query 536 AGGCAATTGTGTACCAACCATACTCTTGTTGATGCAAAACTGTTTATACAGTCAAGGAGG 595
|||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct 654 AGGCAATTGTGTACCAACCATACTATTGCTGATGCAAAACTGTTTATATAGTCAAGGAGG 713
Query 596 CTTGCAGGCAGAGGGCATTTTTAGACTCACTGCTGAGAATAGTGAGGAAGAGGCGGTTAG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 CTTGCAGGCAGAGGGCATTTTTAGACTCACTGCTGAGAATAGTGAGGAAGAGGCGGTTAG 773
Query 656 GGAACAACTAAACCGCGGATTTATACCTGAGAGAATCGATGTTCACTGTTTGGCAGGGCT 715
||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 774 GGAACAATTAAACCGAGGATTTATACCTGAGCGAATCGATGTTCACTGTTTGGCAGGGCT 833
Query 716 TATCAAGGCATGGTTTAGAGAACTGCCTACAAGCGTTCTTGATTCGTTGTCGCCTGAACA 775
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 834 TATCAAGGCATGGTTTAGAGAACTGCCGACAAGCGTTCTTGATTCGTTGTCGCCTGAACA 893
Query 776 GGTGATGCAGTGCCAAACAGAAGAGGAAAATGTAGAGCTCGTTAGGCTTCTTCCACCTAC 835
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 894 GGTGATGCAGTGCCAAACAGAAGAGGAAAATGTTGAGCTCGTTAGGCTTCTTCCACCTAC 953
Query 836 AGAAGCTGCTCTGCTTGATTGGGCCATCAATCTAATGGCAGATGTTGTTCAGTATGAACA 895
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 AGAAGCTGCTCTACTTGATTGGGCCATCAATCTAATGGCAGATGTTGTTCAGTATGAACA 1013
Query 896 TCTTAACAAGATGAATTCACGCAACATCGCTATGGTTTTCGCACCGAATATGACACAGAT 955
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1014 TCTAAACAAGATGAATTCACGCAACATCGCTATGGTTTTCGCACCAAATATGACACAGAT 1073
Query 956 GGATGATCCATTGACAGCACTGATGTATGCGGTTCAAGTCATGAATTTTCTCAAGACACT 1015
|||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1074 GGATGATCCACTGACAGCACTGATGTATGCGGTTCAAGTGATGAACTTTCTCAAGACACT 1133
Query 1016 GATCGATAAAACACTACGGGAGAGGCAAGACTCGGTGGTTGAGCAAGCTCATGTATGCCC 1075
||||| ||||| || | || ||||||||||| ||||| ||||||||||||| || |||
Sbjct 1134 AATCGAAAAAACTTTAAGAGAAAGGCAAGACTCAGTGGTCGAGCAAGCTCATGCATTCCC 1193
Query 1076 TTTACAACCTTCTGATGAGAGCGGTCACCAAAGCCCTTCACAGTCTTTGGCTTTTAACAC 1135
|||| |||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1194 TTTAGAACCGTCTGATGAGAGTGGTCACCAAAGCCCTTCACAATCTTTGGCTTTTAACAC 1253
Query 1136 CATTGAACAGAGTGAAGAAACGCAATCAGACAACATCGAAAATGCTGAAAATCAGAGTTC 1195
|| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 CAGTGAGCAGAGTGAAGAGACGCAATCAGACAACATCGAAAATGCTGAAAATCAGAGTTC 1313
Query 1196 AAGCAGTGAGATATCAGACGAATTAACCCTAGAGAACAATGCATGTGAACAGAGAGAATC 1255
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1314 AAGCAGTGAGATATCAGACGAATTAACCCTAGAGAACAATGCATGTGAACAGAGAGAAAC 1373
Query 1256 AGACTCTGGAAAATGCAGGACCAGGG-GATTGAGCGACTC-AGGTGTACAG-T--TGCTG 1310
||||| |||||||| ||| || ||| ||||||||||||| || | |||| | |||||
Sbjct 1374 AGACTTTGGAAAATACAGAAC-AGGAAGATTGAGCGACTCGAG-TCAACAGGTGGTGCTG 1431
Query 1311 ACTCTGGCTCCTCCAGCTCAGTGGCCTGTGGGCAGAACAAAGGGATTGACCAACTTGAGC 1370
| ||| | |||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1432 AATCTAGATCCTCCAGCTCAGTGGCCAGTGGGCAGAACAAAGGGGTTGACCAACTTGAGC 1491
Query 1371 CGTGTAGGATCTAGGGTAGAGCGTACTGAAGCTTGGCGGTGAAGATAATGGAGCAG 1426
||||||||||| ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1492 CGTGTAGGATCGAGGGTAGAGCGTACTGAAGCTTGGCGGTGAAGAAAAAGGAGCAG 1547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581966270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5