BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941755
Length=1522
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22500.1 | Symbols: FAR1 | fatty acid reductase 1 | chr5:747... 2355 0.0
AT3G44540.1 | Symbols: FAR4 | fatty acid reductase 4 | chr3:161... 837 0.0
> AT5G22500.1 | Symbols: FAR1 | fatty acid reductase 1 | chr5:7470443-7474120
FORWARD LENGTH=1778
Length=1778
Score = 2355 bits (1275), Expect = 0.0
Identities = 1441/1523 (95%), Gaps = 4/1523 (0%)
Strand=Plus/Plus
Query 1 TTGGTTGAGAATAATTTTGTTTCAATGGAATCCAATTGTGTTCAATTTCTCGGTAACAAG 60
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 75 TTGGTTGAGAATCATTTCATTTCAATGGAATCCAATTGTGTTCAATTTCTCGGTAACAAG 134
Query 61 ACCATTCTCATCACTGGGGCACCTGGTTTTCTTGCCAAGGTTTTGGTAGAGAAAATTCTA 120
|||||||||||||| || || ||||||||||||||||||||||||||||||||||| |||
Sbjct 135 ACCATTCTCATCACAGGAGCTCCTGGTTTTCTTGCCAAGGTTTTGGTAGAGAAAATACTA 194
Query 121 AGGTTGCAACCAAATGTGAAGAAGATGTACCTTCTGTTGAGAGCTCCCGACGAAAAATCA 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 195 AGGTTGCAACCAAATGTGAAGAAGATATACCTTCTGTTGAGAGCTCCCGACGAAAAATCA 254
Query 181 GCCATGCAACGCTTATATACTGAGGTTATAGAGATAGACCTCTTTAAAGTGTTGAGGAAC 240
|||||||||||| || || ||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 255 GCCATGCAACGCCTACGTAGTGAGGTTATGGAGATCGACCTTTTTAAAGTGTTGAGGAAC 314
Query 241 GATCTAGGTGAAGAGAACTTGAATGCCTTGGTGCGGaaaaaaaTTGTACCGGTTCCAGGT 300
||||||| ||||| || |||||||||||| ||||| |||||||||| ||||||||||||
Sbjct 315 AATCTAGGAGAAGACAATTTGAATGCCTTGATGCGGGAAAAAATTGTGCCGGTTCCAGGT 374
Query 301 GATATATCGATCGATAATTTGGGACTGAAAGACACCGATCTCATACAACGTTTGTGGAGT 360
|||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct 375 GATATATCGATCGATAATTTGGGATTGAAAGACACTGATCTCATACAACGTATGTGGAGT 434
Query 361 GAGATTGATATCATAATCAACATTGCTGCCACGACAAATTTCGATGAAAGATATGATATT 420
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 435 GAGATTGATATCATAATCAACATAGCAGCCACAACAAATTTCGATGAAAGATATGATATT 494
Query 421 GGTCTTGGGATCAATACATTTGGAGCCCTTAATGTTCTCAACTTCGCCAAAAAGTGCGTT 480
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 495 GGTCTTGGCATCAACACATTTGGAGCCCTGAATGTTCTCAACTTCGCCAAAAAGTGTGTT 554
Query 481 AAAGGACAATTGCTTCTCCATGTCTCGACCGCGTATGTAAGCGGAGAACAATCC-GGGTT 539
|||||||||||||||||||||||||| ||||||||| ||||||| |||||| || || ||
Sbjct 555 AAAGGACAATTGCTTCTCCATGTCTCAACCGCGTATATAAGCGGTGAACAA-CCTGGATT 613
Query 540 ATTACTAGAGAAACCATTCAAGATGGGGGAGACTCTCAGCGAAAAGCGGAAACTAGACAT 599
|||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 614 GTTACTAGAGAAACCATTCAAGATGGGGGAGACTCTCAGCGGGGATCGGGAACTAGACAT 673
Query 600 CAATATAGAACGTGAACTAATGAAACAGAAATTGAAAGAGCTTCAAGATTGTTCTGAAGA 659
||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 674 CAATATAGAACATGATCTAATGAAACAAAAATTGAAAGAGCTTCAAGATTGTTCTGATGA 733
Query 660 AGAGATCTCACAAACAATGAAAGATTTTGGAATGGCAAGGGCAAAGCTTCATGGATGGCC 719
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 AGAGATCTCGCAAACAATGAAAGATTTTGGAATGGCAAGGGCAAAGCTTCATGGATGGCC 793
Query 720 AAATACATATGTATTCACCAAAGCAATGGGAGAGATGCTAATGGGAAAATATAGAGAAAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 794 AAATACATATGTATTCACCAAAGCAATGGGAGAGATGCTAATGGGAAAATACAGAGAAAA 853
Query 780 TTTGCCACTTGTTATCATACGTCCAACAATGATTACTAGTACTCTTGCCGAACCATTCCC 839
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 854 TTTGCCACTTGTTATCATACGTCCAACAATGATTACTAGTACTATTGCCGAACCATTCCC 913
Query 840 CGGTTGGATTGAAGGGTTGAAAACATTAGATAGTGTGATTGTTGCATATGGTAAAGGAAG 899
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 914 CGGTTGGATTGAAGGGTTGAAAACATTAGACAGTGTGATTGTTGCATATGGTAAAGGAAG 973
Query 900 GCTTAAATGTTTTCTTGCGGATTCAAACTCAGTTTTTGACCTTATACCGGCAGACATGGT 959
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 974 GCTTAAATGTTTTCTTGCGGATTCAAACTCAGTCTTTGACCTTATACCGGCAGACATGGT 1033
Query 960 GGTAAATGCGATGATTGCAGCCGCAACAGCTCATTGGGGAGATACCGGGATTCAGGCAAT 1019
|||||||||||| |||||||||| |||||||||| |||||| |||||||||||||||||
Sbjct 1034 AGTAAATGCGATGGTTGCAGCCGCGACAGCTCATTCGGGAGACACCGGGATTCAGGCAAT 1093
Query 1020 ATATCATGTCGGTTCTTCTTGTAAGAATCCGGTCACGTTTGGACAACTTCACGATATCAC 1079
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1094 ATATCATGTTGGTTCGTCTTGTAAGAATCCAGTCACGTTTGGACAACTTCACGATTTCAC 1153
Query 1080 GGCTCGTTACTTTGCTAAACGTCCTCTGGTTGGTCGGAATGGCTCGCCAATCATAGTGAC 1139
|||||||||||| |||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1154 GGCTCGTTACTTCGCTAAACGTCCTTTGATTGGTCGGAATGGCTCGCCAATCATAGTGGT 1213
Query 1140 CAAAGGAACCATTTTGTCCACTATGGCTCAATTCAGCCTCTACATGACCCTTCGTTACAA 1199
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 CAAAGGAACCATTCTGTCCACTATGGCTCAATTCAGCCTCTACATGACCCTTCGTTACAA 1273
Query 1200 GCTTCCTTTACAGATACTTCGATTGATAAATATAGTTTATCCATGGAGTCACGGAGATAA 1259
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1274 GCTTCCTCTACAGATACTTCGATTGATCAATATAGTTTATCCATGGAGTCACGGAGATAA 1333
Query 1260 CTACAATGACCTCAGCCGAAAAATCAAGCTAGCTATGCGACTAGTTGAGCTTTACCAGCC 1319
||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 CTACAGTGACCTAAGCCGCAAAATCAAGCTAGCTATGCGACTAGTTGAGCTTTACCAGCC 1393
Query 1320 TTACTTACTCTTCCAGGGCATATTTGATGATTTAAATACGGAAAGACTGCGAATGAAAAG 1379
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1394 TTACTTACTCTTCAAGGGCATATTTGATGATTTAAATACCGAAAGACTGCGAATGAAAAG 1453
Query 1380 AAAGGAGAATATCAAAGAGTTAGATGGATCGTTCGAGTTCGATCCCAAGTCCATTGATTG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 AAAGGAGAATATCAAAGAGTTAGATGGATCGTTCGAGTTCGATCCCAAGTCCATTGATTG 1513
Query 1440 GGACAATTATATCACAAACACACACATTCCTGGCCTCATCACCTATGTGCTTAAACAATA 1499
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1514 GGACAATTATATCACAAACACCCACATTCCTGGCCTCATCACCCATGTGCTTAAACAATA 1573
Query 1500 AATTATATACTACTAATATGTTT 1522
|||||| || ||||||||||
Sbjct 1574 AATTATG--CTGGTAATATGTTT 1594
> AT3G44540.1 | Symbols: FAR4 | fatty acid reductase 4 | chr3:16124021-16127954
FORWARD LENGTH=1725
Length=1725
Score = 837 bits (453), Expect = 0.0
Identities = 1197/1547 (77%), Gaps = 87/1547 (6%)
Strand=Plus/Plus
Query 1 TTGGTTGAGA-ATAATTTTGTTTCAATGGAATCCAATTGTGTTCAATTTCTCGGTAACAA 59
|||| | ||| |||| ||| ||||||||| |||||||| |||| || ||| | ||||
Sbjct 36 TTGGAT-AGATATAAGTTT-CTTCAATGGACTCCAATTGCATTCAGTTCCTCCATGACAA 93
Query 60 GACCATTCTCATCACTGGGGCACCTGGTTTTCTTGCCAAGGT-TTTGGTAGAGAAAAT-T 117
||| |||||| |||| || | || ||||| || ||||| || ||| || |||||||| |
Sbjct 94 GACGATTCTCGTCACCGGTGTTCCCGGTTTCCTCGCCAAAGTGTTT-GTGGAGAAAATAT 152
Query 118 CTAAGG-TTGCAACCAAATGTGAAGAAGATGTACCTTCTGTTGAGAGCTCCCGACGAA-A 175
| ||| || |||||||| || |||||| | | |||||| |||||||| | ||| ||
Sbjct 153 -TGAGGATT-CAACCAAAGGTAAAGAAGCTTTTCCTTCTTTTGAGAGCAGCAGAC-AATG 209
Query 176 AATCAGCCATGCAACGCTTAT-ATACTGAGGTTATAGAGATAGACCTCTTTAAAGTGTTG 234
|||||||||||||||| || | | | ||||||| | |||| ||| || |||| |||||||
Sbjct 210 AATCAGCCATGCAACGGTT-TCACAGTGAGGTTTTGGAGAAAGATCTTTTTAGAGTGTTG 268
Query 235 AGGAACGATCTAGGTGAAGAGAACT-TGAATGCCTTGGT-GCGGaaaaaaaTTGTACCGG 292
| |||| | ||||||| ||||| | |||| || || | | | ||||| | |||||
Sbjct 269 AAAAACGCTTTAGGTGATGAGAA-TCTGAAAGCTTTCATAACAG-AAAAAGTCGTACCTA 326
Query 293 TTCCAGGTGATATAT-CGATCGATAATTTGGGACTGAAAGACACCGATCTCATACAACGT 351
|||| |||||||||| || | |||||||||||| |||| | | |||||| |||||| |
Sbjct 327 TTCCCGGTGATATATCCG-TTGATAATTTGGGAGTGAAGGGTTCTGATCTCTTACAACAT 385
Query 352 TTGTGGAGTGAGATTGATATCATAATCAACATTGCTGCCACGAC-AAATTTCGATGAAAG 410
|||||| ||||||||||||||| |||| | || ||||| || || ||| ||||||||
Sbjct 386 ATGTGGAATGAGATTGATATCATTGTCAATGTAGCCGCCACAACGAACTTT-GATGAAAG 444
Query 411 ATATGATATTGGTCTT-GGGATCAATACATTTGGAGCC-CTTAATGTTCTCAACTTCGCC 468
||||||| |||||||| | | |||| ||||||||| || || ||||| |||||||| |||
Sbjct 445 ATATGATGTTGGTCTTAGCG-TCAACACATTTGGA-CCGCTCAATGTCCTCAACTTTGCC 502
Query 469 AAAAAGTGCGTTAAAGGACAATTGCTTCTCCATGTCTCGACCGCGTATGTAAGCGGAGAA 528
|| ||||| ||||||||||| |||||||| ||||| || ||||||||||| |||||| |
Sbjct 503 AAGAAGTGTGTTAAAGGACAGTTGCTTCTTCATGTTTCAACCGCGTATGTGCGCGGAG-A 561
Query 529 CAA-TCCGG-GTTATTACTA-GAGAAACCA-TTCAAGATGGGGGAGAC-TCTCAGCGAAA 583
|| || || || |||| | |||||| || ||| | ||||||||||| | | | || |
Sbjct 562 GAAGTCTGGACTT-TTAC-ATGAGAAAACATTTC-ACATGGGGGAGACAT-TGAACGGAC 617
Query 584 AGCGGAAACTAGACATCAATATAG-AACGTGAACTAATGAAACAGAAATTGAAAGAGCT- 641
| | ||| ||| ||| | | | || | || ||||||||||| ||| ||||||||||
Sbjct 618 ATAGAAAATTAGTCATTGAGACCGAAATG-GAGCTAATGAAACAAAAACTGAAAGAGCTA 676
Query 642 -----TCAAGATTGTTCTGAAGAAGAGATCTCACAAACAATGAAAGATTTTGGAATGGCA 696
||| ||||||| ||||||||||| ||||| | ||||||||| |||||||| ||
Sbjct 677 CAGAAACAAAATTGTTCAGAAGAAGAGATTTCACAGTCTATGAAAGATCTTGGAATGTCA 736
Query 697 AGGGCAAAGCTTCATGGATGGCCAAATACATATGTATTCACCAAAGCAATGGGAGAGATG 756
|||||||||||||||||||||||||| |||||||| || |||||| ||||||||||||||
Sbjct 737 AGGGCAAAGCTTCATGGATGGCCAAACACATATGTGTTTACCAAATCAATGGGAGAGATG 796
Query 757 CTAATGGGAAAATATAGAGAAAAT-TTGCCACTTGTTATCATACGTCCAACAATGATTAC 815
|| | || || ||||||||||| || ||| | |||||||| ||||| |||||||| ||
Sbjct 797 CTTCTTGGTAATTATAGAGAAAACCTTCCCA-TCGTTATCATCCGTCCCACAATGATCAC 855
Query 816 TAGTACTCTTGCCGAACCATTCCCCGGTTGGATTGAAGGGTTGAA-AAC-ATTAGATAGT 873
||| ||| || | |||||||| ||||||||||| |||||||| || ||| || ||| |||
Sbjct 856 TAGCACTTTTTCAGAACCATTTCCCGGTTGGATCGAAGGGTT-AAGAACCAT-AGACAGT 913
Query 874 GTGATTGTTGCATATGGTAAAGGAAGGCTTAAATGTTTTCTTGCGGATTCAAACTCAGTT 933
||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct 914 GTGATTGTTGCATATGGCAAAGGAAGGCTTAAATGTTTTCTTGCAGATCCAAACTCAGTC 973
Query 934 TTTGACCTTATACCGGCAGACATGGTGGTAAATGCGATGATTGCAGC--CG-CAA--CAG 988
|||| |||||||| | |||||||| | ||| || ||| | | || || ||| ||
Sbjct 974 CTTGATCTTATACCTGTGGACATGGTCGCAAACGCAATGGTCACGGCTGCGGCAATACA- 1032
Query 989 CTCATTGGGGAGATACCGGGATTC--AGGCAATATATCATGTCGGTTCTTCTTGTAAGAA 1046
| || ||| || || || ||| || | | || |||||||| || |||||||| ||
Sbjct 1033 CGCA--GGGAAGCTA--GG--TTCCCAGACCGTGTACCATGTCGGATCATCTTGTAAAAA 1086
Query 1047 TCCGGTCACGTTTGGACA-ACTTCACGATATCACGGCTCGTTACTTTGCTAAACGTCCTC 1105
||| |||| || | ||| | |||| ||| || ||||| | ||||| | ||| ||||
Sbjct 1087 CCCGATCACATTCGAACAGA-TTCATGATCTCGCGGCTAGCTACTTCACGAAAAACCCTC 1145
Query 1106 TGGTTGGTCG-GAATGGCTCGCCAAT-CATAGTGACCAAAGGAACCATTTTGTCCACTAT 1163
| ||| | || || ||| || | || | |||| |||||||||| || |||||||| ||
Sbjct 1146 TTGTTAGACGCGA-TGGTTCATCTATAC-TAGTCTCCAAAGGAACTATCTTGTCCACAAT 1203
Query 1164 GGCTCAATTCAGCCTCTACATGACCCTTCGTTACAAGCTTCCTTTACAGATACTT-CGAT 1222
|||||| ||||| ||||||||||||||||||||||||| ||||| ||||| || ||||
Sbjct 1204 GGCTCAGTTCAGTTTCTACATGACCCTTCGTTACAAGCTACCTTTGCAGATG-TTGCGAT 1262
Query 1223 TGATAAATATAGTTTATCCATGGAGTCACGG-AGATAACTACAATGACCTC-AGCCGAAA 1280
||||| || || ||||||| ||| | | || | |||| || || ||| | | ||| ||
Sbjct 1263 TGATATATGTAATTTATCCTTGGTGGAATGGTA-ATAAATATAAAGACATTGA-CCGCAA 1320
Query 1281 AATCAAGCTAGCTATGCGACTAGTTGAGCTTTACCAG-CCTTACT-TACTC-TTCCAGGG 1337
|| ||||| || ||||| | || || || ||| || ||||| | | || || ||||
Sbjct 1321 GATTAAGCTGGCGATGCGGTTGGTCGACCTCTAC-AGACCTTA-TGT-CTTGTTTAAGGG 1377
Query 1338 CATATTTGATGATTTAAATACGGA-AAGACTGCGAATGAAAAGAAAGGAGAATA-TCAAA 1395
||||||||| ||| ||||| || || |||||| ||||||||||||||| || | |||
Sbjct 1378 CATATTTGACGATACGAATACTGAGAA-ACTGCGGTTGAAAAGAAAGGAGATTAAT-AAA 1435
Query 1396 GAGTTAG-ATGGATCGTTCGAGTTCGATCCCAAGTCCATTGATTGGGACAATTATATCAC 1454
|| | | |||| | ||| || || ||||| ||||| ||||||||||| ||||||| ||
Sbjct 1436 GAAAT-GTATGGTTTGTTTGAATTTGATCCAAAGTCTATTGATTGGGAGGATTATATGAC 1494
Query 1455 AAACACACACATTCCTGGCCTCATCACCTATGTGCTTAAACAATAAA 1501
| || || ||||| ||||||||||||||||| || ||| ||||||
Sbjct 1495 GACCATTCATATTCCCGGCCTCATCACCTATGTACTCAAAAAATAAA 1541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75100015320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5