BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941757
Length=445
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22530.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 484 2e-136
AT5G22520.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 108 6e-23
> AT5G22530.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G22520.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:7480527-7481194 FORWARD LENGTH=668
Length=668
Score = 484 bits (262), Expect = 2e-136
Identities = 393/451 (87%), Gaps = 29/451 (6%)
Strand=Plus/Plus
Query 9 ccccccAGAAAAATGTCTAGAGGATGTCTAAGTTGTTTCAAAGTCATGTGTTTCGAGAAG 68
||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 86 CCCCCAAGAAAAATGTCTACAGGATGTCTAAGTTGTTTCAAAGTCATGTGTTTCAAGAAG 145
Query 69 AAGCAGAACAAGAAAGAAGAC-AAACCCGTGAAAACAGAAAGATTGCCAGAGCCAGTT-- 125
||||||| ||||||||||| | |||||||| |||||||| | ||||||||||||||||
Sbjct 146 AAGCAGAGCAAGAAAGAAG-CTAAACCCGTAAAAACAGAGATATTGCCAGAGCCAGTTGG 204
Query 126 ----------GA---AG--A-AAAAGAAGGTATACAAGACAAACCTCTGA-AAGCAGAGA 168
|| || | ||||||||||||||||| ||||||||||| || |||||
Sbjct 205 AGAAAAAGAAGATGTAGAAAGAAAAGAAGGTATACAAGCCAAACCTCTGAGAA-CAGAG- 262
Query 169 GG-TTGCCAGAGCCGGTTGaaaaaaaaaaGAAAGATGTTAAATACGGCGCGTGCAAGAAG 227
|| |||||||||||||| ||||| |||||||||||||| |||||| ||||||||||||||
Sbjct 263 GGATTGCCAGAGCCGGTAGAAAAGAAAAAGAAAGATGTAAAATACAGCGCGTGCAAGAAG 322
Query 228 ATGCCCGAGGAATGCATGTTCAAACCCAAACCAGAATGGATCAAG--TATA-GCAGCAGC 284
||||||||| |||||||||||||||||||||||||||||||| | | || |||||| |
Sbjct 323 ATGCCCGAGAAATGCATGTTCAAACCCAAACCAGAATGGATCTCGCATGTAGGCAGCAAC 382
Query 285 GATATTGGACCAAACGTCTACGATTTGTATGGAGATCAATACGCAGAAACAGATGTA-TC 343
||| |||||||||| ||| |||||| ||||||||||| |||||||||||||||| | ||
Sbjct 383 GATGTTGGACCAAAAGTCGGCGATTTTTATGGAGATCACTACGCAGAAACAGATG-ACTC 441
Query 344 TTCTACGTCAATGAATAATGAATTCAACAAAGTGAAGACCTTTGATATACGAGGAGTCAA 403
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 TTCTTCGTCAATGACTAATGAATTCAACAAAGTGAAGACCTTTGATATACGAGGAGTCAA 501
Query 404 AGTAGCCACGGCCAAGGAATAAGAGAAGAGG 434
| ||||||| || |||||||||||||||||
Sbjct 502 ACTAGCCACATCCTAGGAATAAGAGAAGAGG 532
> AT5G22520.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G22530.1);
Has 14 Blast hits to 14 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:7478930-7479527
FORWARD LENGTH=598
Length=598
Score = 108 bits (58), Expect = 6e-23
Identities = 91/106 (86%), Gaps = 6/106 (6%)
Strand=Plus/Plus
Query 334 CAGATGT-ATCTTCTACGTCAATGAATAATGAATTCAACAAAGTGAAGACCTTTGATATA 392
||||||| || |||| | ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 312 CAGATGTCAT-TTCTTCATCAGTGAATAATGATTTCAACAAAGTGAAGACCTTTGATATA 370
Query 393 CGAGGAGTCAAAGTAGCCACGGCCAAG-GAATA---AGAGAAGAGG 434
|||||||||| || || | |||||||| ||| | ||||||||||
Sbjct 371 CGAGGAGTCACAGAAGTCGCGGCCAAGTGAAGATTTAGAGAAGAGG 416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21162722329
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5