BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941759

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22545.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   444    3e-124
  AT5G22520.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...  84.2    8e-16 


> AT5G22545.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G22530.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:7483253-7483811 FORWARD LENGTH=559
Length=559

 Score =  444 bits (240),  Expect = 3e-124
 Identities = 327/367 (89%), Gaps = 13/367 (4%)
 Strand=Plus/Plus

Query  10   AAAATC-TGAAAATGTCTAAAGGATGTCCAAGTTGTCTCAACATCATATGTTTGAG---G  65
            ||||||  |||||||| || ||||||||||||||||||||||||||| ||||||||   |
Sbjct  42   AAAATCAAGAAAATGTGTAGAGGATGTCCAAGTTGTCTCAACATCATGTGTTTGAGAAAG  101

Query  66   AAG-A--AGCAG----AG--GAAGGAGCAGAGTAAGAAACAACAGAAACCTGGGAAAACA  116
            ||| |  || ||    ||  |||||||||||||||||||||||| | ||||| |||||||
Sbjct  102  AAGCAGCAGAAGAATAAGAAGAAGGAGCAGAGTAAGAAACAACACACACCTGTGAAAACA  161

Query  117  GAGGATGTGGTTGAGCCAGTAGGAGTAAGAGATGATGAAGAACAAAGCCTGGAAAAGAAG  176
            |||||| ||||||||||| ||||| ||| ||||||||||||| |||||||||| ||||||
Sbjct  162  GAGGATATGGTTGAGCCACTAGGAATAAAAGATGATGAAGAAGAAAGCCTGGACAAGAAG  221

Query  177  ACGAACATCACGGGAACAATGGGATATTTTCGACCTGAATATATGTCTAGTTATGACAAT  236
            | ||||||||||||||||||||||||| | || |||||||||||||||| | |||||| |
Sbjct  222  ATGAACATCACGGGAACAATGGGATATGTCCGGCCTGAATATATGTCTACTAATGACAGT  281

Query  237  TTTTATGGAAAACTTGGGGAAGGTGATTCTTCTTCATCCTTGAAAAATGATTTCAACAAA  296
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  282  TTTTATCGAAAACTTGGGGAAGGTGATTCTTCTTCATCCTTGAAAAATGATTTCAACAAA  341

Query  297  GTGAAGACCTTTGATTTACGAGGAGTGGCAAAAACAGAGAAGAAGTAAGGAAGAAGATGG  356
            |||||||||||||||||||||||||||  |||||||||| |||||||||||| ||| |||
Sbjct  342  GTGAAGACCTTTGATTTACGAGGAGTGAAAAAAACAGAGGAGAAGTAAGGAAAAAGTTGG  401

Query  357  GACTTGA  363
            |||||||
Sbjct  402  GACTTGA  408


> AT5G22520.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G22530.1); 
Has 14 Blast hits to 14 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:7478930-7479527 
FORWARD LENGTH=598
Length=598

 Score = 84.2 bits (45),  Expect = 8e-16
 Identities = 53/57 (93%), Gaps = 0/57 (0%)
 Strand=Plus/Plus

Query  266  TTCTTCATCCTTGAAAAATGATTTCAACAAAGTGAAGACCTTTGATTTACGAGGAGT  322
            |||||||||  |||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct  322  TTCTTCATCAGTGAATAATGATTTCAACAAAGTGAAGACCTTTGATATACGAGGAGT  378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17091034660


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5