BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941761

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22555.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   422    1e-117


> AT5G22555.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7489422-7490503 
FORWARD LENGTH=523
Length=523

 Score =  422 bits (228),  Expect = 1e-117
 Identities = 298/331 (90%), Gaps = 7/331 (2%)
 Strand=Plus/Plus

Query  1    aaaaaaaaaaGTGAAACAAGATGATT-GCTTTGGTGTTAGGAACCATTTTTGTCGGATCA  59
            ||| |||||||||| ||||||||||| || |||||| ||||||| |||||| ||||||||
Sbjct  9    AAACAAAAAAGTGATACAAGATGATTGGC-TTGGTGCTAGGAACAATTTTTTTCGGATCA  67

Query  60   ATTCCC-ATGTTCATTTACACACGACGTGCAAACGGTCATGAGCCAATACCGAAACATAA  118
            | |||| || ||||||| || ||||| | |||||||||||||||||||||||||||||||
Sbjct  68   A-TCCCTATATTCATTTTCAAACGACATACAAACGGTCATGAGCCAATACCGAAACATAA  126

Query  119  ACGA---GGTGGAAGCAGCATCCTCGCAGTATGTCTAATCCTGCTTTTGTTCCTAACGCA  175
             |||   || ||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct  127  GCGAGGCGGCGGAAGCACCATCATCGCAGTATGTCTAATCCTGCTTTTGTTCCTAACGCA  186

Query  176  AGCACTTGGAGCAAATGTATGCAACGCTGCCGAGGGAACCTGTAAAGCCGGAGCAAAGTC  235
            |||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct  187  AGCACTTGGAGCAAATGTATGCAATGCTGCTGATGGAACCTGTAAAGCCGGAGCAAAGTC  246

Query  236  CGAGACATATGCCGGAGACGAGTTTGATCCCTTTCACGTCGCTGACCATTATGACGATGG  295
             ||||||||||| |||||||||||||| ||||||||||  ||||| ||||||||||| ||
Sbjct  247  AGAGACATATGCAGGAGACGAGTTTGACCCCTTTCACGAAGCTGATCATTATGACGACGG  306

Query  296  TGATGATTGATGATCGACGGGCGATATGCAT  326
            |||||| |||||||||||||| |||||||||
Sbjct  307  TGATGAATGATGATCGACGGGGGATATGCAT  337



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15180860198


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5