BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941764
Length=926
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22570.1 | Symbols: WRKY38, ATWRKY38 | WRKY DNA-binding prot... 1389 0.0
> AT5G22570.1 | Symbols: WRKY38, ATWRKY38 | WRKY DNA-binding protein
38 | chr5:7495539-7496784 REVERSE LENGTH=1016
Length=1016
Score = 1389 bits (752), Expect = 0.0
Identities = 871/929 (94%), Gaps = 6/929 (1%)
Strand=Plus/Plus
Query 1 cacacacacacaAGTTCACTCTACTCTATGGAAATGAACTCCCCACACGAAAAGGCGGTG 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 51 CACACACACACAAGTTCACTATACTCTATGGAAATGAACTCCCCACACGAAAAGGCGGTG 110
Query 61 CAAGCTATCCGATATGGCCTTAGCTGCGCCATGCGGTTAAAGATGCGGATCGACCATCCA 120
||||||||||| ||||||| |||||||||||||||||| |||| |||| || ||||||||
Sbjct 111 CAAGCTATCCGTTATGGCCATAGCTGCGCCATGCGGTTGAAGAGGCGGCTCAACCATCCA 170
Query 121 ATGGCTGATGGCGGACCGGTTTCAAGTTATGATCTTGCTAAATCCATCGCCGAAAGCTTT 180
||||||||||| |||||| ||||||||||||||||||||||||| |||| ||||| |||
Sbjct 171 ATGGCTGATGGTGGACCGCTTTCAAGTTATGATCTTGCTAAATCGATCGTTGAAAGTTTT 230
Query 181 TCCGATGCCATTTCAATCTTATCCGCTAAACCA-ACAACCGAAGATGATCAGTTTTCTGA 239
||| ||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 231 TCCAATGCCATTTCAATCTTATCTGCTAAACCAGA-AACCGAAGATGATCAGTTTTCTGA 289
Query 240 TATATCTTCAAGGGATTCTTTTCCTTCTCCACAGGGGAGCCCCTCCAAGAAAAGAAAGAT 299
| ||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 290 TTTATCTTCTAGGGATTCTTCTCCTCCTCCACAGGGGAGCCCCTCCAAGAAAAGAAAGAT 349
Query 300 TGATAGTACAGATTCAAGTGAGAATTGGAGGGACGATTCACCGGATCCGATTTACTACGA 359
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TGATAGTACAAATTCAAGTGAGAATTGGAGGGACGATTCACCGGATCCGATTTACTACGA 409
Query 360 TGGGTATCTTTGGAGGAAATACGGCCAAAAGAGTATaaaaaaaTCTAATCACCAAAGGAG 419
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 410 CGGGTATCTTTGGAGGAAATATGGTCAAAAGAGTATAAAAAAATCTAATCACCAAAGGAG 469
Query 420 CTACTATAGATGTTCTTACAACAAAGATCATAACTGCGGAGCAAGAAAGCATGAACAAAA 479
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 470 TTACTATAGATGTTCTTACAACAAAGATCATAACTGCGAAGCAAGAAAGCATGAACAAAA 529
Query 480 GATCAAAGATAATCCTCCGGTTTACCGAACCACTTACTTTGGCCACCACACTTGCAAAAC 539
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 GATCAAAGACAATCCTCCGGTTTACCGAACCACTTACTTTGGCCACCACACTTGCAAAAC 589
Query 540 CGAACATAATCTAGATGCCATTTTTATTGCCGGACAAGATCCCGTAGATGACTTGAAAAG 599
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 590 CGAACATAATCTAGATGCCATTTTTATTGCCGGACAAGATCCCCTAGATGACTTTAAAAG 649
Query 600 TGCCCAAATGATCCGCTTCGGAAAAGATCTAA-ATCAGGAGGAGGGAAGCTACTCGAAAG 658
| ||||||||||||| ||||||||||||| | |||||||| ||| |||| |||||| |
Sbjct 650 TACCCAAATGATCCGATTCGGAAAAGATC-AGGATCAGGAGAAGGAAAGCCGCTCGAACG 708
Query 659 GTTTCTCCTTATCGGTTAAG-AGTGAAGAAGATATCACCAGAGAGCAAACCATGGATCAG 717
|||||||||||||||||||| | |||||||||||||| || ||||||| | || ||||||
Sbjct 709 GTTTCTCCTTATCGGTTAAGCA-TGAAGAAGATATCATCAAAGAGCAAGCTATAGATCAG 767
Query 718 TACCGTGAGATAACCAGTAATGACCAAGATTGTCAAGATGTGATTGAAGAAGATCTATCA 777
||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||
Sbjct 768 TACCGTGAGATAACCAGTAATGACCAAGATTGTCAAGATGTTATAGAAGAATATCTATCA 827
Query 778 TCACCATCAGGCTTTTATCTTCCTTCATCGTCATCTGGCAGTGAAAGTGCTGACTTTAAT 837
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TCACCATCAGGCTCTTATCCTCCTTCATCGTCATCTGGCAGTGAAAGTGCTGACTTTAAT 887
Query 838 TCTGATTTGTTAGTTGACAACCTAGACTCGTGGGATTGTTATGATCAGTTTTACTTTGGA 897
|||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| ||
Sbjct 888 TCTGATTTGTTATTTGACAACCCAGACTCGTGGGATCGTTATGATCAGTTTTACTTTTGA 947
Query 898 TTGCACTAGATTTTTTAGCTAAGACTATT 926
||||||||||||||| |||||| ||||||
Sbjct 948 TTGCACTAGATTTTTCAGCTAAAACTATT 976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45260966447
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5