BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941765

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22580.1 | Symbols:  | Stress responsive A/B Barrel Domain |...   580    2e-165


> AT5G22580.1 | Symbols:  | Stress responsive A/B Barrel Domain 
| chr5:7502674-7503449 FORWARD LENGTH=683
Length=683

 Score =  580 bits (314),  Expect = 2e-165
 Identities = 346/362 (96%), Gaps = 0/362 (0%)
 Strand=Plus/Plus

Query  3    GCTAAAGTAATAAAATTAATGGCAACTTCAGGGTTTAAGCATTTGGTGGTTGTGAAGTTT  62
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  18   GCTAAAGTAATAAAATTAATGGCAACTTCAGGGTTTAAGCATTTGGTGGTTGTGAAGTTT  77

Query  63   AAGGAAGATACTAAGGTTGATGAGATCTTGAAGGGCTTGGAGAATCTTGTTTCTCAGATT  122
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  78   AAGGAAGATACAAAGGTTGATGAGATCTTGAAGGGCTTGGAGAATCTTGTTTCTCAGATT  137

Query  123  GATACTGTCAAATCCTTTGAATGGGGAGAAGATAAAGAGAGTCATGAGATGCTTAGACAA  182
            |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  138  GATACTGTCAAATCCTTTGAATGGGGAGAAGATAAAGAGAGTCACGATATGCTTAGACAA  197

Query  183  GGATTTACTCACGCATTTTCGATGACCTTTGAGAACAAAGATGGTTACGTTGCCTTTACA  242
            ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  198  GGATTCACTCATGCATTTTCGATGACCTTTGAGAACAAAGATGGTTACGTCGCCTTCACA  257

Query  243  AGCCATCCCCTTCACGTTGAATTCTCTGCCGCTTTCACCGCCGTCATCGACAAGATTGTT  302
            |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct  258  AGCCATCCTCTTCATGTTGAATTCTCAGCCGCTTTCACCGCCGTCATCGACAAGATCGTT  317

Query  303  CTCCTGGATTTCCCGGTCGCCGCCGTCAAATCTTCCGTTGTTGTAACACCGTGAATCTTG  362
            ||||| |||||||| |||||||| ||||||||||||||||||| |||||| |||||||||
Sbjct  318  CTCCTCGATTTCCCCGTCGCCGCTGTCAAATCTTCCGTTGTTGCAACACCATGAATCTTG  377

Query  363  TG  364
            ||
Sbjct  378  TG  379



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17794783146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5