BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941766
Length=670
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22600.1 | Symbols: | FBD / Leucine Rich Repeat domains con... 797 0.0
AT5G22590.1 | Symbols: | Leucine Rich Repeat protein family | ... 222 3e-57
> AT5G22600.1 | Symbols: | FBD / Leucine Rich Repeat domains containing
protein | chr5:7510023-7511788 FORWARD LENGTH=1573
Length=1573
Score = 797 bits (431), Expect = 0.0
Identities = 478/501 (95%), Gaps = 2/501 (0%)
Strand=Plus/Plus
Query 1 TAAGACTCTATCGGG-AGTTGATGGGTAACTTTGAGTCTGTTTCTTTACCTCGTCTTAAG 59
||||||||||||||| | | |||||||||||||||||||||||||||||||| |||||||
Sbjct 456 TAAGACTCTATCGGGTA-TCGATGGGTAACTTTGAGTCTGTTTCTTTACCTCATCTTAAG 514
Query 60 ACTTTGTGTTTAGAACGAAATATATATCCTAATGAGGCAAGTGTGGAGTCGCTTATCTCG 119
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 515 ACTTTGTGTTTAGAACGAAATATATATCCTAATGAGGCGAGTGTGGAGTCGCTTATCTCG 574
Query 120 TCTTGCCCCGTCCTCGAAGATTTGACCATTGTTAGGATGAATGATAATGTAAAGGTTTTA 179
||||||||||| || ||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 575 TCTTGCCCCGTTCTTGAAGATTTGACCATTCTTAGGATAAATGATAATGTAAAGGTTTTA 634
Query 180 CGAGTGTATTCTCAATCATTAACCAGTTTTAGTGTAGGATATAATCCTGGTGACTTAATT 239
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 635 CGAGTGCATTCTCAATCACTAACCAGTTTTAGTGTAGGATATCATCCTGGTGACTTAATT 694
Query 240 CGTAAGTACAATTATTATTCTGAAAAGGTTAGAGAGAACTCGGGGCTTGTGATTGATGCA 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 CGTAAGTACAATTATTATTCTGAAAAGGTTAGAGAGAACTCGGGGCTTGTGATTGATGCG 754
Query 300 CCTAGACTCAAGTATTTGACTTTCAACTACGAAAGATCGAAAAGTAAAATCGTAAGAAAT 359
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 755 CCTAGACTCAAGTATTTGACTTTCAACTACGAAAGATCGAAAAGTAAAATCATGAGAAAT 814
Query 360 TTGAGTTCTTTAGTTAAGGTCAACGTTCTTAGCGCCTTTGATATTTCAAGTGTAGTTGGC 419
|||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||
Sbjct 815 TTGAGTTCCTTAGTTAAGGTTAACGTTCTTAGCTCCTTTGATATTTCAAGTGTAGCTGGC 874
Query 420 TGTTCAGAGCAACAAATGGCCCATAATTTTTTCACCGGTATCTCGAGAGTTAGGGAAATG 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 875 TGTTCAGAGCAACAAATGGCCCATAATTTTTTCACCGGTATCTCGAGAGTTAGGGATCTG 934
Query 480 ATCATCTCTCAGAATATGATG 500
|||||||||| | ||||||||
Sbjct 935 ATCATCTCTCGGGATATGATG 955
> AT5G22590.1 | Symbols: | Leucine Rich Repeat protein family
| chr5:7504536-7505838 FORWARD LENGTH=915
Length=915
Score = 222 bits (120), Expect = 3e-57
Identities = 365/477 (77%), Gaps = 41/477 (9%)
Strand=Plus/Plus
Query 31 TTGAGTCTGTTTC-TTTACCTCGTCTTAAGACTTTGTGTTTAGAACGAAATATATAT-CC 88
|||||||| |||| || |||||||| |||||| || |||| ||| ||| ||||| ||
Sbjct 266 TTGAGTCTATTTCACTT-CCTCGTCTCAAGACTGTGCATTTACAACTCAATGTATATGCC 324
Query 89 TAATGAGGCAAGTGTGGAGTCGCTT-ATCTCGTCTTGCCCCG-TCCTCGAAGATTTGACC 146
||||| || || ||||||| || ||||| |||| || | || | |||||||| | |
Sbjct 325 -AATGATGCGGGTCTGGAGTC-ATTCATCTCATCTTATCCAGCTCAT-GAAGATTTTAGC 381
Query 147 ATTGTTAG--G-AT-G--A---ATGATAATGTAAAGGTTTTACGAGTGTATTCTCAATCA 197
|||||||| | | | | ||||||||||||| |||||||||||| |||||||| ||
Sbjct 382 ATTGTTAGAAGTGTCGATATCGATGATAATGTAAATGTTTTACGAGTGCATTCTCAAACA 441
Query 198 TTAACCAGTTTTAGTGTAGGATATAATCCTGGTGACTTAATTCGTAAGTACAATTATTAT 257
||||| ||| | ||||||| || | ||| |||||| | || | || | || |||
Sbjct 442 TTAACAAGTCTAAGTGTAGAATTTGATCTTGGTGAGTGGGGTC-T-AGGGC--TT-TTA- 495
Query 258 TCTGAAAAGGTTAGAGAGAACTCGGGGC-TTGTGATTGATGCA-CCTAGACTCAAGTATT 315
|| ||| | ||| | || ||||| ||| |||||||| | |||||| |||||||||
Sbjct 496 --TGTTTTGGTCAAAGATACCT-GGGGCTTTG-GATTGATG-ACCCTAGATTCAAGTATT 550
Query 316 TGACTTTC-AACTACGAAAGATCGAAAAGTAAAATCGTAAGAAATTTGAGTTCTTTAGTT 374
||| |||| ||| | ||| |||| | ||||||| | |||| ||||||| ||| ||||||
Sbjct 551 TGAATTTCAAAC-ATGAACTATCGGATAGTAAAACCATAAGCAATTTGAATTCCTTAGTT 609
Query 375 AAGGTCAACGTTCTTAGCGCCTTTGATAT-T-TCAAGTGTAGTTGGCTGT-TCAGAGCAA 431
|||||||| || || | | |||| |||| | || | || |||||||| | ||| | |||
Sbjct 610 AAGGTCAATTTTGTT-G-G-CTTTTATATGTCTC-A-TGGAGTTGGCT-TATCAAAACAA 663
Query 432 CAAATGGCCCATAATTTTTTCACCGGTATCTCGAGAGTTAGGGAAATGATCATCTCT 488
|||||||||| |||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 664 CAAATGGCCCGTAATGTTTTCACCGGTATCTCGAGAGTTAGGGATCTGATCATCTCT 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32401024815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5