BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941770
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22630.1 | Symbols: ADT5 | arogenate dehydratase 5 | chr5:75... 2025 0.0
AT1G08250.1 | Symbols: ADT6 | arogenate dehydratase 6 | chr1:25... 453 2e-126
> AT5G22630.1 | Symbols: ADT5 | arogenate dehydratase 5 | chr5:7524342-7526160
FORWARD LENGTH=1819
Length=1819
Score = 2025 bits (1096), Expect = 0.0
Identities = 1271/1351 (94%), Gaps = 29/1351 (2%)
Strand=Plus/Plus
Query 1 tttttttatttttCGACTCAAATCATGCAAACCATTTCGCCTGCGTTCTCATGCGATCTC 60
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 280 TTTTTTCATTTTTCGACTCAAATCATGCAAACCATTTCGCCTGCGTTCTCGTGCGATCTC 339
Query 61 AAATCCGTCATTCAACCAAATCTAACGGCAAAGAACGCGCGTTACTCTCAAGTAAATGGA 120
|||||||| |||||||| ||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 340 AAATCCGTAATTCAACCGAATCTAACGGCTAAGAAAGCGCGTTACTCTCACGTAAATGGA 399
Query 121 AAGCGCGTGTCTGTTCGTTGCGGTTACAGGTCTGAGTCGTTTAGCTTCCCTAACGGTGTT 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 400 AAGCGCGTGTCTGTTCGTTGCAGTTACAGGTCTGAGTCGTTTAGCTTCCCTAACGGTGTT 459
Query 181 GGCTCAAGTCGAGCCGATTGGCAAAGCTCATGCGCCATCTTAGCCAGCAAAGTAGTTTCG 240
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 460 GGCTCAAGCCGAGCCGATTGGCAAAGCTCATGCGCCATCTTAGCCAGTAAAGTAGTTTCG 519
Query 241 GCTGAGAATTCAAGCTCAATCACCGGTGGTTTAGCCGATCAAGTCGCTGTCGTTAACGGT 300
|||||||||||||| | | ||| || | | | |||||||||||
Sbjct 520 GCTGAGAATTCAAG---------C-------T--CCG-TC--G-C-C-GTCGTTAACGGA 555
Query 301 CACAGTAACGGCTCCGTTGATCTAAGCCTTGTTCCGTCAAAGTCGCAGCATAACGGAAAG 360
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 556 CACAGTAACGGCTCCGTTGATTTAAGCCTTGTTCCGTCAAAGTCGCAGCACAACGGAAAG 615
Query 361 CCTGGATTGATTCAGCCGTTAACGATAACAGATCTATCTCCGGCGCCGTCTCATGGATCT 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 616 CCTGGATTGATTCAGCCGTTAACGATAACAGATCTATCTCCCGCGCCGTCTCATGGATCT 675
Query 421 ACTCTCCGTGTAGCGTACCAAGGAGTTCCCGGCGCTTATTCCGAAGCAGCCGCCGGAAAA 480
||||| ||||| ||||| ||||||||||| || || || |||||||| ||||||||||||
Sbjct 676 ACTCTTCGTGTCGCGTATCAAGGAGTTCCGGGAGCGTACTCCGAAGCGGCCGCCGGAAAA 735
Query 481 GCTTACCCGAACTCTGAAGCTATTCCTTGTGATCAGTTCGACGTTGCGTTTCAGGCGGTG 540
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 736 GCTTACCCAAACTCCGAAGCTATTCCTTGTGATCAATTCGACGTTGCGTTTCAGGCGGTG 795
Query 541 GAGCTTTGGATCGCCGATCGTGCTGTTCTCCCAGTTGAGAACTCTCTCGGTGGTTCGATT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 GAGCTTTGGATCGCCGATCGTGCTGTTCTCCCAGTTGAGAACTCTCTCGGTGGTTCGATT 855
Query 601 CATAGAAATTACGATCTCCTCCTCCGTCACCGTCTCCACATCGTCGGAGAAGTTCAGATC 660
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 CATAGAAATTACGATCTTCTCCTCCGTCACCGTCTCCACATCGTCGGAGAAGTTCAGATC 915
Query 661 CCGGTTCACCACTGTCTCCTT-GCTCTTCCCGGAGTTCGTACGGATTGCATCACGCGAGT 719
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 916 CCGGTTCACCACTGTCT-CTTAGCTCTTCCCGGAGTTCGTACGGATTGCATCACGCGAGT 974
Query 720 GATTTCGCATCCTCAAGCTCTGGCTCAGACGGAAGGATCGCTCAACAAACTCACTCCAAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 GATTTCGCATCCTCAAGCTCTGGCTCAGACGGAAGGATCGCTCAACAAACTCACTCCAAA 1034
Query 780 AGCAGCGATTGAGGCGTTTCACGACACAGCCGCGGCGGCTGAATACATCGCGGCGAATAA 839
|||||||||||| |||||||||||||||||||||||||| ||||||||||| || || ||
Sbjct 1035 AGCAGCGATTGAAGCGTTTCACGACACAGCCGCGGCGGCGGAATACATCGCTGCTAACAA 1094
Query 840 CCTCCACGACACGGCGGCGGTTGCGAGCGCAAGAGCAGCTGAGCTTTACGGACTTCAGAT 899
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1095 CCTCCACGACACGGCGGCGGTAGCGAGCGCAAGAGCAGCTGAGCTCTACGGACTTCAGAT 1154
Query 900 TCTCGCCGACGGGATCCAAGACGACGCAGGAAACGTCACGCGCTTCCTTATGCTAGCGCG 959
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1155 TCTCGCCGACGGGATCCAAGACGACGCAGGAAACGTCACGCGCTTCCTTATGTTGGCGCG 1214
Query 960 TGATCCAATCATCCCCCGCACGGATCGTCCGTTTAAAACAAGTATCGTTTTCGCCGCTCA 1019
|||||| ||||| ||||| || ||||||||||||||||| |||||||||||||| |||||
Sbjct 1215 TGATCCGATCATTCCCCGTACCGATCGTCCGTTTAAAACGAGTATCGTTTTCGCAGCTCA 1274
Query 1020 AGAACATAAAGGAACTAGCGTTTTATTCAAAGTGCTTTCCGCGTTTGCGTTTCGAAACAT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 AGAACATAAAGGAACTAGCGTTTTATTCAAAGTGCTTTCCGCGTTTGCGTTTCGAAACAT 1334
Query 1080 CAGCTTGACGAAAATCGAATCGCGGCCGCATCATAATTGCCCCGTTAGAGTCGTCGGCGA 1139
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 1335 TAGTTTGACGAAAATCGAATCGCGGCCGCATCAGAATTGTCCCGTTAGAGTCGTAGGCGA 1394
Query 1140 CGAAAACGTAGGAACATCGAAGCACTTTGAGTACACCTTCTACGTCGATTTCGAAGCGTC 1199
||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1395 CGAAAACGTTGGAACATCGAAGCACTTTGAGTACACATTCTACGTCGACTTCGAAGCGTC 1454
Query 1200 GATGGCAGAGGCGCGTGCACAAAACGCGTTAGCGGAGGTGCAAGAGTACACGTCATTCCT 1259
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1455 GATGGCGGAGGCGCGTGCACAAAACGCGTTAGCGGAGGTGCAAGAGTACACGTCATTCCT 1514
Query 1260 CAGGGTGCTGGGAAGTTACCCAATGGATATGACGCCATGGTCCACGTTACCTAGCGAAGA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 CAGGGTGCTGGGAAGTTACCCAATGGATATGACGCCATGGTCCACGTTACCTAGCGAAGA 1574
Query 1320 CGTATGACA-AAT-AATAA-TTTATCTGAAT 1347
||||||||| ||| || || |||||||||||
Sbjct 1575 CGTATGACACAATTAAAAAATTTATCTGAAT 1605
> AT1G08250.1 | Symbols: ADT6 | arogenate dehydratase 6 | chr1:2588857-2590301
REVERSE LENGTH=1445
Length=1445
Score = 453 bits (245), Expect = 2e-126
Identities = 714/935 (76%), Gaps = 54/935 (6%)
Strand=Plus/Plus
Query 391 GATCTATCTCCGGCGCCGTCT-CATGGATCTACTCTCCGTGTAGCGTACCAAGGAGTTCC 449
||||| || ||||| ||| | || ||||||| ||| || || || || ||||| |||||
Sbjct 379 GATCTCTCGCCGGCTCCG-ATGCACGGATCTAATCTACGCGTCGCTTATCAAGGTGTTCC 437
Query 450 CGGCGCTTATTCCGAAGCAGCCGCCGGAAAAGCTTACCCGAACTCTGAAGCTATTCCTTG 509
||| ||||| || ||||||||||| || |||||||| || || | | ||||||| |||||
Sbjct 438 CGGTGCTTACTCTGAAGCAGCCGCTGGTAAAGCTTATCCTAATTGTCAAGCTATACCTTG 497
Query 510 TGATCAGTTCGACGTTGCGTTTCAGGCGGTGGAGCTTTGGATCGCCGATCGTGCTGTTCT 569
||||| || || ||||||||||| |||||||||||||||||||| |||||||||||| |
Sbjct 498 CGATCAATTTGAGGTTGCGTTTCAAGCGGTGGAGCTTTGGATCGCAGATCGTGCTGTTTT 557
Query 570 CCCAGTTGAGAACTCTCTCGGTGGTTCGATTCATAGAAATTACGATCTCCTCCTCCGTCA 629
|| || |||||||||||||| ||||| || || | |||||||||||||||||||||||
Sbjct 558 ACCGGTGGAGAACTCTCTCGGCGGTTCTATCCACCGTAATTACGATCTCCTCCTCCGTCA 617
Query 630 CCGTCTCCACATCGTCGGAGAAGTTCAGA-TCCCGGTTCACCACTGTCTCCTTGCTCTTC 688
|||||| || || ||||| |||||||| | |||| ||||| |||||| | || |||||||
Sbjct 618 CCGTCTTCATATAGTCGGCGAAGTTCA-ACTCCCTGTTCATCACTGTTTACTGGCTCTTC 676
Query 689 CCGGAGTTCGTACGGA-TTGCATCACGCGAGTGATTTCGCATCCTCAAGCTCTGGCTCAG 747
|||| ||||||| || || | |||| || ||||| || || ||||||| ||| ||||||
Sbjct 677 CCGGCGTTCGTAAAGAGTTTC-TCACACGTGTGATCTCACACCCTCAAGGTCTCGCTCAG 735
Query 748 ACG-GAAGGAT-CGCTCAACAAA-CTC--ACTCCAAAA--GCAGCGATTGAGGC-GTTTC 799
| || | | |||||| |||| ||| ||| || ||| || | ||||| |||
Sbjct 736 T-GTGA-GCACACGCTCA-CAAAGCTCGGACTT-AATGTCGCA-CG-T-GAGGCAGTTG- 787
Query 800 ACGACACAGCCGCG-GCGGCTGAATACATCGCGGCGAATAACCTCCACGACACGGCGGCG 858
| ||||| || | | || ||||| | |||||| | || ||||||| |||||| || ||
Sbjct 788 ATGACACCGCAG-GAGCCGCTGAGTTCATCGCCTCTAACAACCTCCGCGACACAGCCGCT 846
Query 859 GTTGCGAGCGCAAGAGCAGCTGAGCTTTACGGACTTC-AGATTCTCGCCGACGGGATCCA 917
| ||||| ||| | || || ||| | ||||| || ||||| | | || ||||| ||
Sbjct 847 ATCGCGAGTGCACGCGCCGCCGAGATATACGGG-TTGGAGATTTTGGAAGATGGGATTCA 905
Query 918 AGACGACGC-AGGAAACGTCACGCGCTTCCTTATGCTAGCGCGTGATCCAATCATCCCCC 976
||||||| || || ||| ||||||||| | ||||| |||||||| |||||||| ||
Sbjct 906 GGACGACGTGAGTAA-CGTGACGCGCTTCGTGATGCTGGCGCGTGAGCCAATCATACCTA 964
Query 977 GCACGGATCGTCCGTTTAAAACAAGTATCGT-TTTCGCCGCTCAAGAACATAAAGGAACT 1035
| || ||| | ||||| || || || || || ||| || || | |||| | |||||
Sbjct 965 GAACAGATAGACCGTTCAAGACTAGCATTGTCTTT-GC-GCACGAGAA-A----GGAACC 1017
Query 1036 AGCGTT-TTATTCAAAGTGCTTTCCGCGTTT-GCGTTTC-GAAACATCAGCTTGACGAAA 1092
||||| || ||||| ||||| || || ||| || || | || |||| |||||||||||
Sbjct 1018 AGCGTGCTT-TTCAAGGTGCTCTCTGC-TTTCGCCTT-CAGAGACATTAGCTTGACGAAG 1074
Query 1093 ATCGAATCGCGGCCGCATCATAATTGCCCCGTT-AGAGTCGTCGGC-GACGAAAACGTAG 1150
||||||||| ||||| |||| || | || | | || ||||| || || | || || |
Sbjct 1075 ATCGAATCGAGGCCGAATCACAACCGTCC-GATCAGGGTCGT-GGATGATGCCAATGTCG 1132
Query 1151 GAACATCGAAGCACTTTGAGTACACCTTCTACGTCGATTTCGAAGCGTCGATGGCAGAGG 1210
| || ||||||| |||||||||| || || || || ||||| || |||||||| ||||
Sbjct 1133 GGACGGCGAAGCATTTTGAGTACATGTTTTATGTTGACTTCGAGGCCTCGATGGCGGAGG 1192
Query 1211 CGCGTGCACAAAACGCG-TTAGCGGAGGTGCAAGAGTACACGTCATTCCT-CAGGGTGCT 1268
||||||| || |||||| || || ||||| || |||| || || ||| | | |||||||
Sbjct 1193 CGCGTGCTCAGAACGCGCTT-GCCGAGGTTCAGGAGTTTACATCGTTCTTGC-GGGTGCT 1250
Query 1269 -GGGAAGTTA-CCCAATGGATATGACGCCATGGTC 1301
|||| |||| |||| |||||||||| || |||||
Sbjct 1251 TGGGA-GTTATCCCA-TGGATATGACTCCTTGGTC 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66314919945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5