BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941774 Length=922 Score E Sequences producing significant alignments: (Bits) Value AT5G22680.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 292 3e-78 > AT5G22680.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G22720.2); Has 65 Blast hits to 64 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:7540041-7540748 REVERSE LENGTH=708 Length=708 Score = 292 bits (158), Expect = 3e-78 Identities = 269/318 (85%), Gaps = 25/318 (8%) Strand=Plus/Plus Query 1 ACAATGCATTTGTGGGTT-T-TAT-GGAA-AAGTTCCTAAATTTCTCTAGGGAAG-AGAA 55 ||||||| |||||||||| | ||| ||| ||||||||| | |||| |||||||| | || Sbjct 140 ACAATGCCTTTGTGGGTTATATATATGAACAAGTTCCTAGA-TTCTATAGGGAAGAAAAA 198 Query 56 GTCATGCTTGTACAAGCTCAGGCTAAGTATTCAAAAGGGTGAGAGTGATGATC-ACTCTT 114 | ||||||| || | | ||||||||||| ||||| || || |||| | | |||| Sbjct 199 AT-ATGCTTGGAC-A----A-GCTAAGTATTCTAAAGGATGTGA---ATGA-CAAGTCTT 247 Query 115 GTGTCACGCGTTGGATAGATTTTGTGGCTACACCTAAACTTAAGCATCTTGAAGTTGAGT 174 ||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||| Sbjct 248 GTGTCACGCGTTGGATAGATTTTGTGGCTACGCCTAAACTTAAGGATCTTGATGTTGAGT 307 Query 175 TTGGTCCTGTGAAGCGTGAGTGTTTGGAAGTGATGCCCT-TAAGCCTCTATATCGGTGAG 233 |||||||| |||||||||||||||||||||||||||| | |||||||||||||| || || Sbjct 308 TTGGTCCTCTGAAGCGTGAGTGTTTGGAAGTGATGCC-TGTAAGCCTCTATATCTGTCAG 366 Query 234 ACACTCCTTTTCTTAAGACTCCATAGGGTATT-TTTGGGTAAGTTT-GAGTCTGTGTCTT 291 |||||||||| ||||||||||||| || |||| ||||| || |||| |||| ||| || | Sbjct 367 ACACTCCTTTACTTAAGACTCCATCGG-TATTGTTTGG-TA-GTTTCGAGTTTGTTTCAT 423 Query 292 TACCTTGTCTCAAGACTA 309 ||||| |||||| ||||| Sbjct 424 TACCTCGTCTCAGGACTA 441 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45060029859 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5