BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941774
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22680.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 292 3e-78
> AT5G22680.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein match
is: F-box/RNI-like superfamily protein (TAIR:AT5G22720.2);
Has 65 Blast hits to 64 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:7540041-7540748
REVERSE LENGTH=708
Length=708
Score = 292 bits (158), Expect = 3e-78
Identities = 269/318 (85%), Gaps = 25/318 (8%)
Strand=Plus/Plus
Query 1 ACAATGCATTTGTGGGTT-T-TAT-GGAA-AAGTTCCTAAATTTCTCTAGGGAAG-AGAA 55
||||||| |||||||||| | ||| ||| ||||||||| | |||| |||||||| | ||
Sbjct 140 ACAATGCCTTTGTGGGTTATATATATGAACAAGTTCCTAGA-TTCTATAGGGAAGAAAAA 198
Query 56 GTCATGCTTGTACAAGCTCAGGCTAAGTATTCAAAAGGGTGAGAGTGATGATC-ACTCTT 114
| ||||||| || | | ||||||||||| ||||| || || |||| | | ||||
Sbjct 199 AT-ATGCTTGGAC-A----A-GCTAAGTATTCTAAAGGATGTGA---ATGA-CAAGTCTT 247
Query 115 GTGTCACGCGTTGGATAGATTTTGTGGCTACACCTAAACTTAAGCATCTTGAAGTTGAGT 174
||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||
Sbjct 248 GTGTCACGCGTTGGATAGATTTTGTGGCTACGCCTAAACTTAAGGATCTTGATGTTGAGT 307
Query 175 TTGGTCCTGTGAAGCGTGAGTGTTTGGAAGTGATGCCCT-TAAGCCTCTATATCGGTGAG 233
|||||||| |||||||||||||||||||||||||||| | |||||||||||||| || ||
Sbjct 308 TTGGTCCTCTGAAGCGTGAGTGTTTGGAAGTGATGCC-TGTAAGCCTCTATATCTGTCAG 366
Query 234 ACACTCCTTTTCTTAAGACTCCATAGGGTATT-TTTGGGTAAGTTT-GAGTCTGTGTCTT 291
|||||||||| ||||||||||||| || |||| ||||| || |||| |||| ||| || |
Sbjct 367 ACACTCCTTTACTTAAGACTCCATCGG-TATTGTTTGG-TA-GTTTCGAGTTTGTTTCAT 423
Query 292 TACCTTGTCTCAAGACTA 309
||||| |||||| |||||
Sbjct 424 TACCTCGTCTCAGGACTA 441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45060029859
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5