BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941784
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32470.1 | Symbols: | F-box associated ubiquitination effec... 196 2e-49
AT5G22792.1 | Symbols: | pseudogene of F-box family protein | ... 154 1e-36
AT5G22791.2 | Symbols: | F-box family protein | chr5:7603500-7... 95.3 8e-19
> AT2G32470.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:13787172-13788894 FORWARD LENGTH=1723
Length=1723
Score = 196 bits (106), Expect = 2e-49
Identities = 466/629 (74%), Gaps = 67/629 (11%)
Strand=Plus/Plus
Query 215 ATTACGTTTTCACGTTAAGCTCTCAACAAAAAGAGTGGAGAAAGATTGAAATCACC-CAA 273
||| |||||||||| |||| ||||||||||||||||||||||||||||||| |||| |
Sbjct 669 ATTTCGTTTTCACGCTAAGTTCTCAACAAAAAGAGTGGAGAAAGATTGAAAACACCACTG 728
Query 274 GATATTACTTAT-ATCACGGTAC-ATGAAGGAATATGCATGGATGGTGCTATATACTATG 331
|| | |||||| | || ||| | ||| ||| |||||||| |||||||||||||||||||
Sbjct 729 GAGAA-ACTTATCA-CATGGT-CTATGGAGGGATATGCATAGATGGTGCTATATACTATG 785
Query 332 GAGATGGAC-GCTCAGGAATAGATATATTCGATGTTAGATCTGAGAAGCTGGAGCTAATT 390
| | | || | ||| ||||| || |||||||||||| ||||||||| |||| | |||
Sbjct 786 GGGTTTCACAG-TCAATAATAGTTAAATTCGATGTTAGGTCTGAGAAGATGGAATTCATT 844
Query 391 CAAATAC-CAGAAGGGTCAGATATAGCGC-AC--T--T-TTCCGCTCTTATAAATTACAA 443
||| || | |||| ||| |||| |||| || | | |||| ||||| || |||
Sbjct 845 CAAGCACAC-GAAGTATCACATATCGCGCCACCATACTATTCCACTCTTTTATATTTGTC 903
Query 444 TGGCAA-ATTGGGCGGTGT--AGAAT-ATG--ATTGCC----TAATATTGTGGATTCTAG 493
| || | || | | || | ||||| || | || ||| ||| ||||||||||
Sbjct 904 TAGCGATAT-GATCCGTATGGAGAATCATTCCAATGAAGAGGTAAGATTTTGGATTCTAG 962
Query 494 AGGATGCTAAGAAACATAAGTGGT-CGGAGATGGCGTGTCCCCTAGCTTTTGAGTGGAGT 552
|||||||| |||||| | || | | || | ||||||||| | | | | | | | | |
Sbjct 963 AGGATGCTGAGAAAC-TCAGAGTTTCGCATATGGCGTGTGA--T-G-TGT-G-G-G-A-T 1012
Query 553 GATTTACTTGGGGA-TCACATAACGTCCAATGGG-GAGATTCATACCGGTGAGCTTATGG 610
|||| ||||||| | | || ||| | |||| || |||||||||||||| |||||||||
Sbjct 1013 GATTCACTTGGGAAGT-ACGTAAGGGCCAA-GGAAGAGATTCATACCGGCAAGCTTATGG 1070
Query 611 TGG-TTAATCCAGGGTTA-AG--GTCA---TCTAAGCCGTTTAGTGTTTGC-TATTACGA 662
|| || ||||| ||||| | |||| | ||| ||||||||||||||| | |||| |
Sbjct 1071 -GGATTTATCCACGGTTACAATCGTCAAAATATAAACCGTTTAGTGTTTGCGT-TTACCA 1128
Query 663 TTTTAATAGAGAGAGAATAAGAATAAGAAAAGTGGAGGTTGAAGGAATTG-CTGATGATG 721
|||||| | || | | ||| || || || || | | | |||||| | | || ||||
Sbjct 1129 TTTTAACAAAGTGGGGTTAA-AA-AA-AACAGAG-A--TCCAAGGAAGTAAC-GACGATG 1181
Query 722 A-ATTTAGACGTT--TTCATGGGATTGGTAAGCGAACTCGTGAGATGTTGTGTTTTCCAG 778
| ||| ||| || || ||||||||||| |||||||| |||||| ||| |||| ||
Sbjct 1182 ATATT-AGAT-TTCGTTG-TGGGATTGGTATGCGAACTCATGAGATATTGA-TTTTGGAG 1237
Query 779 GTTACGTTGAGAATATTAAGTTCTTGTGA 807
||||| |||||||||||| ||||||||||
Sbjct 1238 GTTACATTGAGAATATTAGGTTCTTGTGA 1266
> AT5G22792.1 | Symbols: | pseudogene of F-box family protein
| chr5:7606735-7607667 REVERSE LENGTH=609
Length=609
Score = 154 bits (83), Expect = 1e-36
Identities = 215/276 (78%), Gaps = 19/276 (7%)
Strand=Plus/Plus
Query 136 GTGGAAGACCAATACAAAGTGTTGTGTGTAATGATATTCCGTGGTTAC-AACGCTA-ACC 193
|||||||| |||||||||||| ||||||| ||||| |||||| | ||| ||| |
Sbjct 37 GTGGAAGATCAATACAAAGTGCTGTGTGTGATGATGTTCCGTCGCTACGGCCGCGATGGT 96
Query 194 AACGAGATATCCAACAAGAGCATTACGTTTTCACGT-TAAGCTCTCAACAAAAAGAGTGG 252
|| ||| || |||| ||||||| ||||||||| | | || ||||||||||||||||||
Sbjct 97 AA--AGACATAGAACAGGAGCATTTCGTTTTCAC-TCTGAGATCTCAACAAAAAGAGTGG 153
Query 253 AGAAAGATTGAAATCACCCAAGATATTACTTATATCACG--GTACATGAAGGAATATGCA 310
||||||||||| ||||| |||| | |||| | || | || || | |||||||||||
Sbjct 154 AGAAAGATTGACGTCACCGGAGAT-T--CTTACA-CA-GATGTCCAAGGAGGAATATGCA 208
Query 311 TGGATGGTGCTATATACTATGGAG-A-T-GGACGCTCAGGAATAGATATATTCGATGTTA 367
| |||||||||||||||||||||| | | |||| | | | ||| || ||| |||||||
Sbjct 209 TCGATGGTGCTATATACTATGGAGGAGTTGGACACAAAATATTAGCTAGATTTGATGTTA 268
Query 368 GATCTGAGAA-GCTGGAGCTAATTCAAATACCAGAA 402
|||| ||||| | ||||| | ||| ||| || ||||
Sbjct 269 GATCCGAGAAAG-TGGAGTTTATTAAAACAC-AGAA 302
> AT5G22791.2 | Symbols: | F-box family protein | chr5:7603500-7604822
REVERSE LENGTH=1198
Length=1198
Score = 95.3 bits (51), Expect = 8e-19
Identities = 150/195 (77%), Gaps = 17/195 (9%)
Strand=Plus/Plus
Query 219 CGTTTTCACGTTAAGCTCTCAACAAAAAGAGTGGAGAAAGATTGAAATCACCCAAGAT-A 277
|||||||||| |||||||||||||||||||||||||||||||||| || ||| |||| |
Sbjct 501 CGTTTTCACGCTAAGCTCTCAACAAAAAGAGTGGAGAAAGATTGACATAACCAAAGAAGA 560
Query 278 TTA-CTTATATCACGGTACATGAA-GGA---ATATGCATGGATGGTGCTATATACTATGG 332
| | | || | || ||||||| || || ||||| |||||||||||| |||||||
Sbjct 561 AGATCCT-TA-C-CGCCACATGAAAGGTGGGATTTGCATAGATGGTGCTATACACTATGG 617
Query 333 AGATG-G-ACGCTCAGGAA--TAGATATATTCGATGTTAGATCTGAGAAGCTGGAGCTAA 388
|| | | | | || || ||| || ||| ||||||||| | |||||| | ||| | |
Sbjct 618 AGTTTTGTA---T-AGAAAAATAGCTAGATTTGATGTTAGAACCGAGAAGATTGAGTTCA 673
Query 389 TTCAAATACCAGAAG 403
||||| ||||||||
Sbjct 674 TTCAAGGACCAGAAG 688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40338020041
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5