BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941785

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G32470.1 | Symbols:  | F-box associated ubiquitination effec...   163    5e-40


> AT2G32470.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr2:13787172-13788894 FORWARD LENGTH=1723
Length=1723

 Score =  163 bits (88),  Expect = 5e-40
 Identities = 151/181 (83%), Gaps = 6/181 (3%)
 Strand=Plus/Plus

Query  31   TCACAACCTTCTCCCTCAAGTAACCTAGTTCACGCCGAAAACTCCACAACAAA-CATTC-  88
            ||| || |||||||| || ||||||||| |||| ||| ||||||||||| ||| || || 
Sbjct  117  TCAAAATCTTCTCCCCCACGTAACCTAGATCACTCCGGAAACTCCACAA-AAACCA-TCT  174

Query  89   CTCTTGATCTCACCATCGAGATACTCGCTAGACTTCCGGGGAATTCCATCATCCGATTCC  148
            || ||||||||||| ||||||||||  | |  ||||||   || ||||| ||||||||||
Sbjct  175  CTTTTGATCTCACCTTCGAGATACTATCGATCCTTCCGACCAAATCCAT-ATCCGATTCC  233

Query  149  AAATACGTGTCAAAGCTCTGGTTCTCAATCATCCGCAGTAAAGATTTCACAGACTCGTTC  208
             ||| ||| ||||||||||||||||||||||||||||||||||| |||   |||||||||
Sbjct  234  -AATCCGTATCAAAGCTCTGGTTCTCAATCATCCGCAGTAAAGAATTCGTTGACTCGTTC  292

Query  209  C  209
            |
Sbjct  293  C  293



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9356051286


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5