BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941786
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32470.1 | Symbols: | F-box associated ubiquitination effec... 545 3e-154
AT5G22791.2 | Symbols: | F-box family protein | chr5:7603500-7... 525 4e-148
> AT2G32470.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:13787172-13788894 FORWARD LENGTH=1723
Length=1723
Score = 545 bits (295), Expect = 3e-154
Identities = 924/1213 (76%), Gaps = 101/1213 (8%)
Strand=Plus/Plus
Query 31 TCACAAA-CTTCTCCCTCAAGTAACCTAGATGACGCCGGAAACTCCACACCAAA-CATTC 88
||| ||| |||||||| || ||||||||||| || |||||||||||||| ||| || ||
Sbjct 117 TCA-AAATCTTCTCCCCCACGTAACCTAGATCACTCCGGAAACTCCACA-AAAACCA-TC 173
Query 89 -CTCTTGATCTCACCTTAGAGATACTCTCTAGACTTCCGGCGAAATCCCTCATCCGGTTC 147
|| ||||||||||||| |||||||| || | |||||| | |||||| | ||||| |||
Sbjct 174 TCTTTTGATCTCACCTTCGAGATACTATCGATCCTTCCGACCAAATCCAT-ATCCGATTC 232
Query 148 CAAGCCGTGTCTAAGTTCTGGTTCTCAATCATCCGCAGTAAAGATTTCGTCGACTCGTTC 207
||| |||| || ||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 233 CAATCCGTATCAAAGCTCTGGTTCTCAATCATCCGCAGTAAAGAATTCGTTGACTCGTTC 292
Query 208 CTGACTAGGTCAAAGACTCGACCTCGTTTCCTTTTAACCTTCAAGA-ACTTCGATTCCCG 266
||||||||||||||||| || || ||| ||||||| || ||||| | |||| |||||| |
Sbjct 293 CTGACTAGGTCAAAGACACGGCCGCGTCTCCTTTTCACTTTCAA-ACACTTGGATTCC-G 350
Query 267 GA-AA-CGTTTCATCTTCTCAGCTCCTGAACACCaaaaaaaTGACAAATCCTC-CACAGT 323
| || | |||||||| |||||||||||| ||| | || || |||||||| | | |
Sbjct 351 -ACAAGCTTTTCATCTACTCAGCTCCTGATCACGACAACG--GA-AAATCCTCTC-CGGG 405
Query 324 TTTCGCCAGACACGACATGACGATCTCGGCCGATCGGGTCTACCACATCAGATGTCGTCC 383
| |||||||||||||||||||||||| ||| || || ||||||||| || ||
Sbjct 406 CATAGCCAGACACGACATGACGATCTCGAATT-TCG--TCAACTACATCAGATCTCC-CC 461
Query 384 C-GTGAACGGTTTCGTCTGCTGCACGCGTGGTG-ATTCGATCGCGGTTTGTAATCCAACC 441
| || ||||| ||||| || ||||| |||||| || |||||||||||||||||||||||
Sbjct 462 CTGTCAACGGATTCGTTTGTTGCACACGTGGTTCAT-CGATCGCGGTTTGTAATCCAACC 520
Query 442 ACTAGACAAATAGTGAAATTGCCAGATGTTGA-ATCCAACGGAAGAC-ACGTGTACGCAC 499
|| ||||||||||| ||| |||| ||||||| | |||||| || | || || ||| ||
Sbjct 521 ACGAGACAAATAGTAAAACTGCCCGATGTTGTTA-CCAACGAAA-ATTACATGCACGTAC 578
Query 500 GTCTCGGATACGATCCAGTCGAAGATCAATACAAAGTGTTGT-G-T-GTAATGTTTTTCG 556
||||||||||||||||||| |||||||||||||||||||||| | | || ||| | ||||
Sbjct 579 GTCTCGGATACGATCCAGTGGAAGATCAATACAAAGTGTTGTTGGTTGTGATGATGTTCG 638
Query 557 ATCCTTACAGTGCTAAGTGTAAGCGACAAGGTACCCAACCGGAGCCTTACGTTTTCACAT 616
| | | |||| | | | ||| | ||| | | ||| || |||||||||
Sbjct 639 A-C------G-GCTA--T--A-GA-ACA-GATACAGATCAGGAATATTTCGTTTTCACGC 683
Query 617 TGCAA-T-CTCAGCAAAAAGAGTGGAGAAAGATTGAAATCACGCAA-GGTGTTGCTTATC 673
| || | |||| ||||||||||||||||||||||||| ||| || || | ||||||
Sbjct 684 T--AAGTTCTCAACAAAAAGAGTGGAGAAAGATTGAAAACAC-CACTGGAGAAACTTATC 740
Query 674 GC-TCGGTCGATGGAGGGATATGCATCGATGGTGCTATATACTTTGGAGATGGAC-GCTC 731
| | |||| |||||||||||||||| |||||||||||||||| ||| | | || | ||
Sbjct 741 ACAT-GGTCTATGGAGGGATATGCATAGATGGTGCTATATACTATGGGGTTTCACAG-TC 798
Query 732 AAGAATAGTTAGATTCGATGTTAGATCTGAGACGTTGGAGCTAATTCAAGCACCCGAAA- 790
|| |||||||| |||||||||||| ||||||| | |||| | |||||||||| ||||
Sbjct 799 AATAATAGTTAAATTCGATGTTAGGTCTGAGAAGATGGAATTCATTCAAGCACACGAAGT 858
Query 791 ATTCAC-TAATCACGGAAACGTCCGATTCTGCTCTTTTAAATTA--CAATG-GAAAATTG 846
|| ||| || || || | | | | |||| |||||||| ||| | | | || | | |
Sbjct 859 AT-CACATA-TCGCGCCACCATACTATTCCACTCTTTTATATTTGTCTA-GCGATA-T-G 913
Query 847 GGCGGTGTTGATTATAATTACACTAGA-GAGACAATATTGTGGATTCTAGAGGATGCTGA 905
| || | || || ||| || | || ||| || ||| ||||||||||||||||||||
Sbjct 914 ATCCGTATGGAGAATCATTCCAAT-GAAGAGGTAAGATTTTGGATTCTAGAGGATGCTGA 972
Query 906 GAAACA-AGAATGGTCGGA-ATTGAGGTTTGCCCGACCTTCTGAGTGGGATGATTTACTT 963
||||| ||| | ||| | || | | | || | | || |||||||||| ||||
Sbjct 973 GAAACTCAGAGTT-TCGCATATGGCG-TGTG----A--TG-TG--TGGGATGATTCACTT 1021
Query 964 GAGGAT-TACTTTACCTCTGAGGGAGAGAGTCATACCGGTGAGCTTATTATGG-TTGATT 1021
| ||| ||| | | | ||| ||||| ||||||||| ||||||| || || ||
Sbjct 1022 G-GGAAGTACGTAAGGGCCAAGGAAGAGATTCATACCGGCAAGCTTATGG-GGATTTATC 1079
Query 1022 CACGGTTA-A-TA-TCA---TCTGAGCCGTTTAGTGTTTGC-TATTACGATTTTCATAGA 1074
|||||||| | | ||| | | | ||||||||||||||| | |||| ||||| | | |
Sbjct 1080 CACGGTTACAATCGTCAAAATATAAACCGTTTAGTGTTTGCGT-TTACCATTTTAACAAA 1138
Query 1075 GAGAGCTTAAGAAGAGTGGAGGTCCAAGGAATTG-CGGATGATGA-ATTTAGACGT-GTT 1131
| | | |||| || | ||| ||||||||| | || | ||||| ||| ||| | |||
Sbjct 1139 GTGGGGTTAAAAAAAACAGAGATCCAAGGAAGTAACG-ACGATGATATT-AGATTTCGTT 1196
Query 1132 TATGGGATTGGTAAGCGAACTCGTGAGATTTTGGGTTTTCCAGGTTATGTTGAGAATATT 1191
||||||||||| |||||||| |||||| ||| |||| |||||| |||||||||||
Sbjct 1197 G-TGGGATTGGTATGCGAACTCATGAGATATTGA-TTTTGGAGGTTACATTGAGAATATT 1254
Query 1192 AGGTTCTTGTGAG 1204
|||||||||||||
Sbjct 1255 AGGTTCTTGTGAG 1267
> AT5G22791.2 | Symbols: | F-box family protein | chr5:7603500-7604822
REVERSE LENGTH=1198
Length=1198
Score = 525 bits (284), Expect = 4e-148
Identities = 404/460 (88%), Gaps = 16/460 (3%)
Strand=Plus/Plus
Query 15 AGCCGCCATGGAAGATTCACAAAC-TTCTCCCTCAAGTAACCTAGATGACGCCGGAAACT 73
||| || ||||||||||||| ||| |||||||||| ||||||||||| | ||||||||||
Sbjct 45 AGCAGCTATGGAAGATTCAC-AACTTTCTCCCTCACGTAACCTAGATCAAGCCGGAAACT 103
Query 74 CCACACCAAACATTCCTCTTGATCTCACCTTAGAGATACTCTCTAGACTTCCGGCGAAAT 133
|| || ||||||||||| |||||||||| ||||||||| |||| ||||||||||| |||
Sbjct 104 CCTCAACAAACATTCCTTTTGATCTCACATTAGAGATAGTCTCGAGACTTCCGGC-AAAA 162
Query 134 CC-CTCATCCGGTTCCAAGCCGTGTCTAAGTTCTGGTTCTCAATCATCCGCAGTAAAGAT 192
|| | |||||||||||||||||||| ||| |||||||||| | ||||||||||||| ||
Sbjct 163 CCTATAATCCGGTTCCAAGCCGTGTCAAAGCTCTGGTTCTCTACCATCCGCAGTAAAAAT 222
Query 193 TTCGTCGACTCGTTCCTGACTAGGTCAAAGACTCGACCTCGTTTCCTTTTAACCTTCAAG 252
||| |||||||||||||||||||||||||||||| |||||| || |||| ||||| ||
Sbjct 223 TTCACCGACTCGTTCCTGACTAGGTCAAAGACTCGTCCTCGTCTCTTTTTCACCTTTAA- 281
Query 253 A-ACTTCGATTCCCGGAAACGTTTCATCTTCTCAGCTCCTGAACACCaaaaaaaTGACAA 311
| |||||||||||||||||||||||||||||||||||||||||| | | || ||||||||
Sbjct 282 ACACTTCGATTCCCGGAAACGTTTCATCTTCTCAGCTCCTGAACGCGACAACAATGACAA 341
Query 312 ATCCTCCACAGTTTTCGCCAGACACGACATGACGATCTCGGCCGATCGGGTCTACCACAT 371
||||||||||||| ||||||||||||||||||||||||||| | ||| |||| | |
Sbjct 342 ATCCTCCACAGTTGTCGCCAGACACGACATGACGATCTCGGATG-TCGC--CTAC-A--T 395
Query 372 CAGATGTCGTCCC-GTGAACGGTTTCGTCT-GCTGCACGCGTGGTGATTCGATCGCGGTT 429
||||| || |||| || |||||||| || | ||| |||||||||||||||||||||||||
Sbjct 396 CAGATCTC-TCCCCGTCAACGGTTT-GTTTTGCTACACGCGTGGTGATTCGATCGCGGTT 453
Query 430 TGTAATCCAACCACTAGACAAATAGTGAAATTGCCAGATG 469
|||||||| ||||||||||||||||| |||||||||||||
Sbjct 454 TGTAATCCCACCACTAGACAAATAGTTAAATTGCCAGATG 493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60090052365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5