BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941792
Length=2979
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22800.1 | Symbols: EMB86, EMB1030, EMB263 | Alanyl-tRNA syn... 4678 0.0
AT1G49930.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 174 4e-42
> AT5G22800.1 | Symbols: EMB86, EMB1030, EMB263 | Alanyl-tRNA synthetase,
class IIc | chr5:7616073-7619981 REVERSE LENGTH=3105
Length=3105
Score = 4678 bits (2533), Expect = 0.0
Identities = 2830/2977 (95%), Gaps = 6/2977 (0%)
Strand=Plus/Plus
Query 3 CCTCCTCAAAACTCTGTGATGAATTTCTCCAGAGTAAACCTCTTCGATTTTCCTCTTAGA 62
||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 CCTCCTC-ATACTCTCTGATGAATTTCTCCAGAGTAAACCTCTTCGATTTTCCTCTTAGA 62
Query 63 CCGATTTTACTTTCGCATCCCTCTTCTATTTTCGTTTCTAAACGTTTTGTTACCAGAACC 122
|| ||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 63 CCAATTTTGCTTTCGCATCCTTCTTCTATTTTCGTTTCTACACGTTTTGTTACCAGAACC 122
Query 123 TCTGCTGCTGTTTCTCCTTCTACCTTGCTTCCCAAATCAACTCAGTCAGCTCAGATTATT 182
||||| | |||||||||||||| ||| ||||||| |||||||||||| |||||||||||
Sbjct 123 TCTGCAGGTGTTTCTCCTTCTATCTTACTTCCCAGATCAACTCAGTCTCCTCAGATTATT 182
Query 183 GCCAAGAGCTCATCAGTATCAGTACAGCCGGTGTCTGAGGATGCTAAGGAGGATTATCAG 242
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 183 GCTAAGAGCTCATCAGTATCAGTACAGCCAGTGTCTGAGGATGCTAAGGAGGATTATCAG 242
Query 243 TCCAAGGATGTTAGTGGAGATTCTATACGGCGGCGGTTTCTCGAATTCTTTGCCTCTCGT 302
||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct 243 TCCAAAGATGTTAGTGGAGATTCAATACGGCGGCGTTTTCTTGAATTCTTTGCTTCTCGT 302
Query 303 GGGCATAAGGTGCTTCCAAGTGCGTCTCTTGTGCCAGAAGATCCTACTGTCCTGCTAACA 362
|| |||||||||||||||||| |||||||||| |||||||||||||| ||| ||||||||
Sbjct 303 GGTCATAAGGTGCTTCCAAGTTCGTCTCTTGTACCAGAAGATCCTACCGTCTTGCTAACA 362
Query 363 ATTGCAGGAATGCTTCAGTTTAAGCCTATTTTCCTGGGAAAGGTACCTAGACAGGTTCCT 422
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 363 ATTGCAGGAATGCTTCAGTTTAAGCCTATTTTCCTTGGAAAGGTACCTAGAGAGGTTCCT 422
Query 423 TGTGCAACCACTGCACAAAGGTGCATACGTACCAACGATTTGGAGAATGTTGGGAAAACG 482
|||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 423 TGTGCAACCACTGCGCAAAGGTGTATACGTACGAATGATTTGGAGAATGTTGGGAAAACG 482
Query 483 GCCAGGCACCATACCTTCTTTGAGATGCTTGGGAACTTTAGCTTTGGTGATTACTTCAA- 541
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GCTAGGCACCATACTTTCTTTGAGATGCTTGGGAACTTTAGCTTTGGTGATTACTTCAAG 542
Query 542 AAAGGAAGCCATAAGATGGGCATGGGAGCTGTCGACTATTGAGTTTGGGTTACCTGCTAA 601
||| ||||| |||| ||||||||||||||| || ||||||||||||||| |||| |||||
Sbjct 543 AAA-GAAGCGATAAAATGGGCATGGGAGCTTTCAACTATTGAGTTTGGGCTACCAGCTAA 601
Query 602 TAGGGTTTGGGTTAGCATTTACGAAGACGATGATGAAGCTTTTGAAATCTGGAAAAATGA 661
||| ||||||||||| || || |||||||||||||||||||||||||||||||| |||||
Sbjct 602 TAGAGTTTGGGTTAGTATATATGAAGACGATGATGAAGCTTTTGAAATCTGGAAGAATGA 661
Query 662 AGTTGGTGTGCCTGTTGAGCGGATAAAGAGAATGGGTGAAGCTGACAACTTTTGGACTAG 721
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 AGTTGGTGTTTCTGTTGAGCGGATAAAGAGAATGGGTGAAGCTGACAACTTTTGGACTAG 721
Query 722 TGGACCAACTGGTCCTTGTGGTCCATGCTCAGAGTTATACTATGATTTCTATCCTGAGAG 781
|||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 722 TGGACCAACTGGTCCTTGTGGTCCATGCTCTGAGTTGTACTATGACTTCTATCCTGAGAG 781
Query 782 AGGTTCTGATGATGATGTTGATCTTGGGGATGATACCAGATTTATTGAGTTCTATAATTT 841
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 AGGTTATGATGAAGATGTTGATCTTGGGGATGATACCAGATTTATTGAGTTCTATAATTT 841
Query 842 GGTTTTCATGCAGTATAACAAGACGGAAGATGGATTGCTTGAGCCCTTGAAACAGAAGAA 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 GGTTTTCATGCAGTATAACAAGACGGAAGATGGATTGCTTGAGCCCTTGAAACAGAAGAA 901
Query 902 TATAGACACTGGTCTTGGTTTGGAACGTATAGCTCAAATCCTTCAGAAGGTTCCAAACAA 961
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TATAGATACTGGTCTTGGTTTGGAACGTATAGCTCAAATCCTTCAGAAGGTTCCAAACAA 961
Query 962 CTACGAGACAGATTTGATATATCCAATCATTGCGAAGATCTCAGAGTTGGCGAATATCTC 1021
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 962 CTACGAGACAGATTTGATATATCCAATCATTGCAAAGATCTCAGAGTTGGCGAATATCTC 1021
Query 1022 ATACGACTCTGCAAATGAAAAGGCAAAGACAAGTCTAAAAGTAATTGCAGATCACATGCG 1081
||| |||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1022 ATATGACTCTGCAAATGACAAGGCAAAGACAAGTTTAAAAGTGATTGCAGATCACATGCG 1081
Query 1082 GGCAGTTGTCTATCTCATATCAGACGGTGTTTCGCCTTCAAATATTGGCAGAGGTTATGT 1141
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1082 GGCAGTTGTCTATCTCATATCAGATGGTGTTTCTCCTTCAAATATTGGCAGAGGTTATGT 1141
Query 1142 AGTAAGGAGGCTTATAAGAAGGGCAGTTCGGAAGGGGAAGTCTCTCGGAATAAATGAGGA 1201
|| |||||||| |||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1142 GGTTAGGAGGCTAATAAGAAGAGCAGTTCGGAAGGGGAAGTCTCTCGGAATAAATGGGGA 1201
Query 1202 TA-GAAATGGTAATCTAAAGGGAGCGTTTTTGCCAGCAGTTGCTGAAAAGGTGATAGAGT 1260
|| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1202 TATG-AATGGTAATCTAAAGGGAGCGTTTTTGCCAGCGGTTGCTGAAAAGGTGATAGAGT 1260
Query 1261 TGAGCACCTATATTGATTCAGATGTAAAACTAAAGGCCCCACGAATCATTGAGGAGATTA 1320
||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1261 TGAGCACTTATATTGATTCAGATGTAAAACTAAAGGCCTCACGCATCATTGAGGAGATTA 1320
Query 1321 GGCAAGAGGAACTTCACTTTAAGAAAACTCTGGAAAGAGGAGAAAAGTTACTTGACCAAA 1380
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GGCAAGAAGAACTTCACTTTAAGAAAACTCTGGAAAGAGGAGAAAAGTTACTTGACCAAA 1380
Query 1381 AGCTTAACGATGCCCTGTCAATTGCTGATAAAACTAAGAATACGCCTTATCTGGATGGAA 1440
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1381 AGCTTAACGATGCATTGTCAATTGCTGATAAAACTAAGGATACGCCTTATCTGGATGGAA 1440
Query 1441 AAGATGCGTTTCTTCTGTATGACACATACGGCTTCCCGGTGGAGATAACCGCAGAAGTTG 1500
|||||||||||||||| |||||||||| ||||| || ||||||||||| ||||||||||
Sbjct 1441 AAGATGCGTTTCTTCTTTATGACACATTTGGCTTTCCTGTGGAGATAACTGCAGAAGTTG 1500
Query 1501 CTGAAGAACGTGGAGTCAGTATAGATATGAAAGGTTTTGAAGTAGAAATGGAGAATCAAA 1560
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1501 CTGAAGAACGTGGAGTCAGTATAGATATGAATGGTTTTGAAGTGGAAATGGAGAATCAAA 1560
Query 1561 GACGTCAATCTCAAGCTGCTCACAATGTTGTAAAACTGACAGTTGAAGACGATGCTGATA 1620
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1561 GACGTCAATCTCAAGCTGCTCACAATGTTGTAAAACTGACAGTTGAAGACGATGCTGACA 1620
Query 1621 TCACGAAAAATATTGCAGGCACTGAGTTCCTTGGATATGACAGTCTCTCTGCTCGTGCTG 1680
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TGACGAAAAATATTGCAGACACTGAGTTCCTTGGATATGACAGTCTCTCTGCTCGTGCTG 1680
Query 1681 TTGTTAAAAGTCTTTTGGTGGATGGGAAGCCTGTGATAAAGGTGTCTGAAGGCAGTAAAG 1740
|||| ||||||||||||||| |||||||||||||||||| ||| |||||||||||| |||
Sbjct 1681 TTGTGAAAAGTCTTTTGGTGAATGGGAAGCCTGTGATAAGGGTTTCTGAAGGCAGTGAAG 1740
Query 1741 TAGAGATTCTGCTTGACAGAACTCCGTTCTATGCTGAATCAGGAGGTCAAATTGCAGATC 1800
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 TAGAGGTTCTGCTGGACAGAACTCCGTTCTATGCTGAATCAGGAGGTCAAATTGCAGATC 1800
Query 1801 ATGGTTTTCTTTATGTTAACAGTGATGGGAACCAAGAGAATGCTGTTGTTGAGGTAAGTG 1860
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1801 ATGGTTTTCTTTATGTTAGCAGTGATGGGAACCAAGAGAAAGCTGTTGTTGAGGTAAGTG 1860
Query 1861 ATGTGCAGAAGTCTCTTAAAATTTTTGTTCACAAGGGCACTGTAAAAAGTGGAGCTCTAG 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 ATGTGCAGAAGTCTCTTAAAATTTTTGTTCACAAGGGCACTGTAAAAAGTGGAGCTCTAG 1920
Query 1921 AAGTTGGCAAAGAGGTGGAAGCAGCAGTAGATGCAGACAAGAGGCAACGAGCGAAGGTTC 1980
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1921 AAGTTGGCAAGGAGGTGGAAGCAGCAGTAGATGCAGACTTGAGGCAACGAGCGAAGGTTC 1980
Query 1981 ACCATACAGCCACCCATTTGCTGCAATCGGCACTTAAGAAAGTAGTAGGACAAGAAACAT 2040
||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1981 ACCATACCGCCACTCATTTGCTCCAATCGGCACTTAAAAAAGTAGTAGGACAAGAAACAT 2040
Query 2041 CTCAGGCTGGTTCATTAGTAGCTTTTGACCGCCTGAGATTCGATTTCAATTTTAATCGGT 2100
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2041 CACAGGCTGGTTCATTAGTAGCTTTTGACCGCCTCAGATTCGATTTCAATTTTAATCGGT 2100
Query 2101 CCCTGCATGATAACGAGCTCAAGGAAATCGAATGCCTGATCAACAGGTGGATTGGGGATG 2160
||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 2101 CCCTGCATGATAATGAGCTTGAGGAAATCGAATGCCTGATCAATAGGTGGATTGGGGATG 2160
Query 2161 CTACACGTCTTGAAACAAAAGTCCTTCCTCTTGCTGATGCAAAACGAGCTGGAGCCATCG 2220
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2161 CTACACGTCTTGAAACAAAAGTCCTTCCTCTTGCTGATGCAAAACGTGCTGGAGCCATCG 2220
Query 2221 CAATGTTTGGGGAAAAATATGATGAAAACGAGGTTCGTGTAGTAGAAGTTCCTGGTGTCT 2280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 CAATGTTTGGGGAAAAATATGATGAAAACGAGGTTCGTGTAGTAGAAGTTCCTGGTGTCT 2280
Query 2281 CCATGGAACTTTGTGGTGGCACTCATGTTGGCAATACTGCAGAAATACGAGCCTTCAAAA 2340
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2281 CCATGGAACTTTGTGGTGGCACTCATGTTGGCAATACTGCAGAAATACGAGCCTTCAAGA 2340
Query 2341 TTCTCTCAGAACAGGGCATTGCATCTGGAATCAGGCGTATCGAAGCGGTTGCGGGTGAAG 2400
|| ||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct 2341 TTATCTCAGAACAGGGCATTGCATCTGGAATCCGGCGTATAGAAGCGGTTGCAGGTGAAG 2400
Query 2401 CATTCATTGAATACATAAACTCACAGGATTCTCAAATGACACGTCTATGCTCGACTCTCA 2460
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2401 CATTCATTGAATACATAAACTCACGGGATTCTCAAATGACACGTCTATGCTCGACTCTCA 2460
Query 2461 AGGTGAAAGCAGAGAAGGTTATAGAGACAGTGGAGAAACTTCTAAAGGAACTGCGTGCAG 2520
|||||||||||||| | |||| | | | ||||||||| |||||| ||||||| ||||| |
Sbjct 2461 AGGTGAAAGCAGAGGATGTTACAAACAGAGTGGAGAATCTTCTAGAGGAACTACGTGCTG 2520
Query 2521 CTAAAAAAGAAGCCTCTGACTTGCGTTCAAAAGCAGCGGTCTATAAAGCATCTGTCATAT 2580
||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2521 CTAGAAAAGAAGCCTCCGACTTGCGTTCAAAAGCAGCTGTCTATAAAGCATCTGTCATAT 2580
Query 2581 CGAAGAATGCATTTACTGTAGGAACTTCACAGACGATAAGAGTGCTTGTCGAGTCTATGG 2640
|||| || |||||||||||||||||||||||||| ||||||||||| || ||||| ||||
Sbjct 2581 CGAACAAAGCATTTACTGTAGGAACTTCACAGACTATAAGAGTGCTCGTTGAGTCGATGG 2640
Query 2641 ATGACACCGATGCTGACTCATTAAAGAGTGCAGCTGAGCATTTGATAACCACGTTGGAAG 2700
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 2641 ATGACACCGATGCTGACTCATTAAAGAGTGCAGCTGAGCATTTGATAAGCACATTGGAAG 2700
Query 2701 ATCCAGTGGCTGTGGTATTAGGATCATCTCCAGAGAAAGACAAGGTTAGTTTAGTTGCTG 2760
||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 2701 ATCCAGTCGCTGTGGTACTAGGATCATCTCCAGAAAAAGACAAGGTTAGTTTAGTTGCTG 2760
Query 2761 CATTTAGTCCAGGAGTAGTCTCTCTAGGAGTTCAAGCAGGGAAATTCATTGGCCCCATAG 2820
|||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 2761 CATTTAGTCCTGGAGTAGTCTCCCTAGGTGTTCAAGCAGGGAAATTCATTGGCCCCATAG 2820
Query 2821 CTAAGCTGTGTGGTGGAGGAGGTGGTGGAAAACCCAATTTTGCTCAGGCAGGCGGCAGAA 2880
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2821 CTAAGCTGTGTGGCGGAGGAGGTGGTGGAAAGCCCAATTTTGCTCAGGCAGGCGGCAGAA 2880
Query 2881 AGCCTGAAAATCTCCCAAGTGCCTTAGAGAAAGCTCGGGAAGATCTCGTGGCAACTCTAT 2940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2881 AGCCTGAAAATCTCCCAAGTGCCTTAGAGAAAGCTCGGGAAGATCTCGTGGCAACTCTAT 2940
Query 2941 CCGAAAAGCTAGGGTGAAGCACAA-CTTCAAAAGTGA 2976
|||||||||||||||||||||||| ||||||||||||
Sbjct 2941 CCGAAAAGCTAGGGTGAAGCACAAACTTCAAAAGTGA 2977
> AT1G49930.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Alanyl-tRNA synthetase, class IIc (TAIR:AT5G22800.1);
Has 21 Blast hits to 21 proteins in 10 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18484932-18485639
FORWARD LENGTH=405
Length=405
Score = 174 bits (94), Expect = 4e-42
Identities = 100/103 (97%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 2877 AGAAAGCCTGAAAATCTCCCAAGTGCCTTAGAGAAAGCTCGGGAAGATCTCGTGGCAACT 2936
|||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 134 AGAAAGCCCGAAAATCTCTCAAGTGCCTTAGAGAAAGCTCAGGAAGATCTCGTGGCAACT 193
Query 2937 CTATCCGAAAAGCTAGGGTGAAGCACAACTTCAAAAGTGAACT 2979
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 CTATCCGAAAAGCTAGGGTGAAGCACAACTTCAAAAGTGAACT 236
Score = 161 bits (87), Expect = 3e-38
Identities = 101/108 (94%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 2637 ATGGATGACACCGATGCTGACTCATTAAAGAGTGCAGCTGAGCATTTGATAACCACGTTG 2696
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1 ATGGATGACACCGATGCTGACTCATTAAAGAGTGCAGCTGAGCATTTGATAAGCACATTG 60
Query 2697 GAAGATCCAGTGGCTGTGGTATTAGGATCATCTCCAGAGAAAGACAAG 2744
|| |||||||| | ||||||| |||| |||||||||||||||||||||
Sbjct 61 GATGATCCAGTCGTTGTGGTACTAGGTTCATCTCCAGAGAAAGACAAG 108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148092815736
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5