BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941802
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22870.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 915 0.0
> AT5G22870.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr5:7647056-7647679
REVERSE LENGTH=624
Length=624
Score = 915 bits (495), Expect = 0.0
Identities = 580/621 (93%), Gaps = 6/621 (1%)
Strand=Plus/Plus
Query 33 CACAAGCTCAACCTAGAACCAATGCC-ATTGAAAACTTCGCCAGCGCAGCCACTGCGTCG 91
||||||| ||| |||||| ||||| | || |||||||||||||||||||| |||| ||
Sbjct 7 CACAAGCCCAAGCTAGAATTGATGCCGA-TGGAAACTTCGCCAGCGCAGCCATTGCGCCG 65
Query 92 CCCTAGCCTTGTATGCTATGTTTTTCTCGTCATACTAACTCTAATATTTATCGCAGCTGT 151
|||||||||| ||||||| |||||||||| |||||||||||||| || || ||||||||
Sbjct 66 CCCTAGCCTTATATGCTACATTTTTCTCGTTATACTAACTCTAATCTTCATGGCAGCTGT 125
Query 152 AGGTTTCCTCATTACCTGGCTTGTAACCAAACCCAAGAAACTTCATTACACTGTTGAAAG 211
|||||| |||||||| ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 126 AGGTTTTCTCATTACATGGCTTGAAACCAAACCCAAGAAACTTCGTTACACTGTTGAAAA 185
Query 212 CGCCTCGGTT-AGAAACTTTAACCTTACCAACGACAATCACATGTCAGCTACATTCAAAT 270
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 186 CGCCTCGGTTCA-AAACTTTAACCTTACCAACGACAATCACATGTCAGCTACATTCCAAT 244
Query 271 TCACCATACAATCGCACAACCCTAACCACAGAATCTCGGTTTACTACAGTTCCGTCGAGA 330
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 TCACCATCCAATCGCACAACCCTAACCACAGAATCTCGGTTTACTACAGTTCCGTCGAGA 304
Query 331 TATTCGTTAAATTCAAGGACCAGACACTTGCGTTCGACAC-GATGGAGCCGTTTCACCAA 389
|||||||||||||||| |||||||| |||||||||||||| | |||||||||||||||||
Sbjct 305 TATTCGTTAAATTCAAAGACCAGACGCTTGCGTTCGACACAG-TGGAGCCGTTTCACCAA 363
Query 390 CCGCGGATGAACGTTAAGCAGATTGATGAAACGTTGGTTGCGCAAAACGTTGCCTTTTCC 449
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 364 CCGCGGATGAACGTTAAGCAGATTGATGAAACGTTGATTGCGGAAAACGTTGCCGTTTCA 423
Query 450 AAATCCAATGGTAAGGATTTGAGGTCTCAAACTTCGTTGGGAAAGATTGAGTTTGAAGTT 509
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 424 AAATCCAATGGTAAGGATTTGAGGTCTCAAAATTCGTTGGGAAAGATTGGGTTTGAAGTT 483
Query 510 TTTGTTAAGGCGAGGGTTAGGTTTAAAGTGGGGATATGGAAGTCATCACATCGTACGGCT 569
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 484 TTTGTTAAGGCTAGGGTTAGGTTTAAAGTGGGGATATGGAAGTCATCACATCGTACAGCT 543
Query 570 AAGATTGAGTGTTCTCATGTCACGGTCTCTTTGTCGCAGCCAAACAAATCCCAAAATAGT 629
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 544 AAGATTAAGTGTTCTCATGTCACGGTCTCTTTGTCGCAGCCTAACAAATCCCAAAATAGT 603
Query 630 TCGTGTGATGCTGATATTTGA 650
|| ||||||||||||||||||
Sbjct 604 TCATGTGATGCTGATATTTGA 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32601961403
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5