BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941803
Length=1529
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28680.1 | Symbols: | Serine carboxypeptidase S28 family pr... 664 0.0
AT5G22860.1 | Symbols: | Serine carboxypeptidase S28 family pr... 534 8e-151
> AT3G28680.1 | Symbols: | Serine carboxypeptidase S28 family
protein | chr3:10748751-10749734 REVERSE LENGTH=601
Length=601
Score = 664 bits (359), Expect = 0.0
Identities = 421/451 (93%), Gaps = 4/451 (1%)
Strand=Plus/Plus
Query 602 TGTTGGCAGCTTGGTTCAAGCTAAAATACCCACACATAGCGCTCGGGGCTTTAGCATCCT 661
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 69 TGTTGGCAGCTTGGTTCAAGCTAAAATACCCATACATAGCGCTCGGGGCTTTAGCATCCT 128
Query 662 CAGCCCCTCTTCTCTATTTTGAAGACACACTTCCAAAACATGGTTACTTTTATATAGTAA 721
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 129 CAGCCCCCCTCCTCTATTTTGAAGACACACTTCCAAAACATGGTTACTTTTACATAGTAA 188
Query 722 CCAAAGTTTTCAAGGAAACGAGCCAGAAATGTCATAACAAGATACGTAAATCTTGGGATG 781
|||||||||||||||||| |||| || |||||||||||||||||| ||||||||||||||
Sbjct 189 CCAAAGTTTTCAAGGAAATGAGCAAGGAATGTCATAACAAGATACATAAATCTTGGGATG 248
Query 782 AAATAGACAGGATTGCTGCCAAACCCAACGGTCTGTCAATCCTCAGCAAAAAATTCAAGC 841
||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||
Sbjct 249 AAATAGACAGGATTGCTGCCAAACCTAACAGTCTCTCAATCCTCAGCAAAAATTTCAAGC 308
Query 842 TGTGCAATCCTTTGAACGACACCATTGAACTCAAAAGCTATCTGAGTAACATATACGCCG 901
||||||||||||||||||||| || ||||||||||||||| ||||| ||||||||| ||
Sbjct 309 TGTGCAATCCTTTGAACGACATTATCGAACTCAAAAGCTATGTGAGTTACATATACG-CG 367
Query 902 -GGACAGCTCAATACAACAACAATCCGTAT-TCGGTTGCCAGCTTGTGCGAGGCTATTAA 959
||||||||||||||| | |||||| || | ||||||||||| ||||| |||||||||||
Sbjct 368 AGGACAGCTCAATACAGCGACAATCAGT-TCTCGGTTGCCAGGTTGTGTGAGGCTATTAA 426
Query 960 CACCAGCCCACCAAACACTAAGAGTGATCTACTAGACCAGATCTTCGCAGGTGTGGTTGC 1019
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 CACAAGCCCACCAAACACTAAGAGTGATCTACTAGACCAGATCTTCGCAGGTGTGGTTGC 486
Query 1020 TTCTGGGGGTAATATTTCTTGTTATGGTATG 1050
|||| | || |||||||||||||||||||||
Sbjct 487 TTCTAGAGGAAATATTTCTTGTTATGGTATG 517
> AT5G22860.1 | Symbols: | Serine carboxypeptidase S28 family
protein | chr5:7639318-7642984 REVERSE LENGTH=1741
Length=1741
Score = 534 bits (289), Expect = 8e-151
Identities = 1025/1370 (75%), Gaps = 91/1370 (7%)
Strand=Plus/Plus
Query 185 AAATTTTCTTCTTTGAA-CAAACCCTTGACCACTTCACCTACACTCCGGGAAGTTACAAG 243
|||| | || |||| || || || || || |||||||| | ||| |||| ||| |||| |
Sbjct 203 AAATGTACTACTTT-AATCAGACACTCGATCACTTCACATTCACACCGGAAAGCTACATG 261
Query 244 AAGTTCCGACAAAGATATGCCGTCAATTCCAAGTATTGGGAAGGTGGAAAAACCAATGCA 303
| || | ||||||||| ||| | |||||| | | |||| |||| ||| |||| ||
Sbjct 262 ACTTTTCAACAAAGATACGCCATTGATTCCACGCACTGGGGTGGTGCTAAAGCCAACGCG 321
Query 304 CCTATCCTAGC-TTATCTTGGAGCGGAATCTTCATTGGACTCTGAATTGAGCGT-TC-TT 360
|| ||| |||| || |||||||| ||||| || || |||||||| ||| || | | |
Sbjct 322 CCAATCTTAGCATT-TCTTGGAGAAGAATCGTCGTTAGACTCTGATTTG-GC-TGCCATC 378
Query 361 GG-CTTCCTCAAAGATAACGCTCCTCATTTCAAA-GCCCTCATGGTCTACATAGAGCATA 418
|| ||| || || |||| ||||| | ||| || ||| | ||||||||||||||||
Sbjct 379 GGTTTTCTTC-GTGACAACGGTCCTCGCCT-AAATGCGCTCCTCGTCTACATAGAGCATA 436
Query 419 GGTTTTACGGAGAAACTATGCCATTTGGGTCGGCGGAGGAAACGTTGAAGAACGCCAA-A 477
||| ||| || || || ||||||||||| || || || ||| | | ||||||| |||
Sbjct 437 GGTATTATGGGGAGACGATGCCATTTGGATCAGCAGAAGAAGCACTAAAGAACG-CAAGT 495
Query 478 ACCTTGGGATATTTAAACGCTGCTCAAGCCCTTGCGGATTATGCTGCAATTCTTC-TGCA 536
|| ||||| ||||| ||||| || |||||||| || || ||||| || |||| || ||||
Sbjct 496 ACGTTGGGGTATTTGAACGCAGCACAAGCCCTAGCAGACTATGCCGCGATTC-TCTTGCA 554
Query 537 CATTAAGGAGACA-TACT-CAGCTAAACACAGTCCGGTAATAGTTATTGGAGGATCCTAT 594
| ||||||||| | |||| || | || ||||| || | || || |||||||||||||||
Sbjct 555 CGTTAAGGAGA-AGTACTCCA-CCAATCACAGCCCTATCATTGTAATTGGAGGATCCTAT 612
Query 595 GGCGGAATGTTGGCAGCTTGGTTCAAGCTAAAATACCCACACATAGCGCTCGGGGCTTTA 654
|| |||||||| || || ||||||| ||||||||| ||||||||||| ||||| || |||
Sbjct 613 GGTGGAATGTTAGCGGCATGGTTCAGGCTAAAATATCCACACATAGCACTCGGAGCATTA 672
Query 655 GCATCCTCAGCCCCTCTTCTCTATTTTGAAGACACACTTCCAAAACATGGTTACTT-TTA 713
||||| ||||| ||||||||||| |||||||| || | ||| ||| |||||| || |||
Sbjct 673 GCATCTTCAGCTCCTCTTCTCTACTTTGAAGATACTCGTCCTAAATTTGGTTA-TTATTA 731
Query 714 TATAGTAACCAAAGTTTTCAAGGAAACGAGCCAGAA-ATGTCATAACA-AGATACGTAAA 771
||| ||||||||||||||||||||| | || | || |||| |||| | | || |||||
Sbjct 732 TATTGTAACCAAAGTTTTCAAGGAAGCAAGTGA-AAGATGTTATAATACA-ATCCGTAAT 789
Query 772 TCTTGGGAT-GAAATAGACAGGA-TTGCTGCCAAACCCAACGGTCTGTCAATCCTCAGCA 829
|||| |||| ||||| || | || |||||| ||||||||| ||||| || ||||| ||||
Sbjct 790 TCTT-GGATAGAAATCGATA-GAGTTGCTGGCAAACCCAATGGTCTCTCGATCCTTAGCA 847
Query 830 AAAAATTC-AAGCTGTGCAATCCTTTGAAC-GACACCATT-GA-ACTCAAAAG-CTATCT 884
|| ||||| || || ||| ||| |||||| || | | || || | || |||| || | |
Sbjct 848 AACAATTCAAAACT-TGCGCTCCATTGAACGGA-AGC-TTCGATA-TC-AAAGACTTTTT 902
Query 885 GAGTA-AC-ATATACGCCGGGA-CAGCTCAATACAA-CAACAATCCG---TATTCGGTTG 937
| | | || ||||| ||| | | | | ||||||||| | | |||| | || ||| |
Sbjct 903 G-G-ACACAATATATGCC-GAAGCTGTTCAATACAACCGA-GGTCCGAATTTTTGGGTGG 958
Query 938 CCAGCTTGTGCGAGGCTATTAACACCAGCCCACCAAACAC-TAAGAGT--GATCTACTAG 994
||| ||||| | || || ||| ||| ||||||||| | | ||| | || |||| |
Sbjct 959 CCAAAGTGTGCAACGCAATCAACGCCAATCCACCAAAC-CGT-AGA-TACAATTTACTCG 1015
Query 995 ACCAGATCTTCGCAGGTGTGGTTGCTTCT-GGGGGTAA---TA-TTTCT-TGTTA-TGGT 1047
||| ||| || || ||||| || |||| | | || || | || || || ||
Sbjct 1016 ACCGGATTTTTGCTGGTGTTGTCGCTT-TAGTAGGCAACCGAACTTGCTATGATACAAAA 1074
Query 1048 ATG---GATCAGATC-ACAAACGATGCCAGGGCATGGACATGGCAGAGTTGCAGCGAAAT 1103
||| | ||| | |||||| || || ||||||| ||||||||| |||||||| ||
Sbjct 1075 ATGTTTGCGCAG-CCAACAAACAATAACATCGCATGGAGATGGCAGAGCTGCAGCGAGAT 1133
Query 1104 GGTTATGCCCATAGGATATGAGAAAGAAGATACTATGTT-CCAACCGAAACCGTTCAATA 1162
|| |||||| | |||||||| ||| ||||||| ||||| |||| || ||| || || |
Sbjct 1134 AGTGATGCCCGTGGGATATGACAAACAAGATACAATGTTCCCAA-CGGCACCATTTAACA 1192
Query 1163 TGAGCAGTTTTACT-AAAAACTGCGAA-TCACAGT-ACGGTGTCTCACCTCGTCCGCATT 1219
||| ||||| | | | | || || || | | | |||||| | ||| | || ||||
Sbjct 1193 TGACCAGTTACATTGATGGA-TG-TAAGTCTTA-TCATGGTGTCACTCCTAGACCACATT 1249
Query 1220 GGGTCACGGCATACTTCGG-TTCTCAGGACGTTAAGTTAATTTTTCGACGATTTGGCAA- 1277
|| |||| | || ||||| | |||||| || |||||||| | | | |||||| ||
Sbjct 1250 GGATCACAACTTATTTCGGCAT-TCAGGAGGTCAAGTTAATCCTCCAAAAATTTGG-AAG 1307
Query 1278 CAACATAATCTTCTCCAATGGGTTGT-TAGATCCATATAGTGTCGGCGGCGTATTGGAGG 1336
|||||| || ||||| ||||| |||| | ||||| ||||| || ||||| || |||||||
Sbjct 1308 CAACATCATTTTCTCTAATGGATTGTCT-GATCCTTATAGCGTTGGCGGAGTTTTGGAGG 1366
Query 1337 ATATCTCAGACACTGTAATTGCCATCACGACAAGAGACGGCTCTCATTGTC-AGGACATT 1395
|||| ||||| ||| || ||||||| ||||||| | | || || ||||||| | || ||
Sbjct 1367 ATATTTCAGATACTTTAGTTGCCATTACGACAAAAAATGGTTCACATTGTCTA-GATATC 1425
Query 1396 GTCTTAAAGAGCAAGGAGGACCCGGAGTGGCTGGTGGA-GCAAAGAGAGAAAGAAG-TTA 1453
||| |||||||| || || ||||||||||| || || ||||||||||||| || |||
Sbjct 1426 ACCTTGAAGAGCAAAGAAGATCCGGAGTGGCTAGT-GATTCAAAGAGAGAAAG-AGATTA 1483
Query 1454 AAATAATTGATTCTTGGATTTCAACTTATCAAAAAGATCTTAACATATCT 1503
|| | ||||||||||||||||||||||||||||| ||||| || | ||||
Sbjct 1484 AAGTTATTGATTCTTGGATTTCAACTTATCAAAATGATCT-AAGAGATCT 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75451419135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5