BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941816
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22990.1 | Symbols: | C2H2-like zinc finger protein | chr5:... 1153 0.0
> AT5G22990.1 | Symbols: | C2H2-like zinc finger protein | chr5:7691494-7692468
REVERSE LENGTH=975
Length=975
Score = 1153 bits (624), Expect = 0.0
Identities = 867/980 (88%), Gaps = 34/980 (3%)
Strand=Plus/Plus
Query 21 ATGACTTCAATTCCAAACGGTTTGTACTCTTATGGTGATGATACTATGAATATTCGTGGT 80
||||||||||| ||||| || || | ||||||| ||| |||||| |||| ||| |||||
Sbjct 1 ATGACTTCAATCCCAAATGGCTTAAATTCTTATGTTGACGATACTGTGAACATTTGTGGT 60
Query 81 TTTACTCCCATCGAAATGAGTTCCAACCTTAGGAATCACGAGTCTAAGATAGTTCAGTCA 140
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 61 TTTACTCCCATCGAAATGAGTTCCAACCTTAGGAATCATGAGTCTAAGATGGTTCACTCA 120
Query 141 ATGTTCAATACTTCTGACCACTCGAACCATCATGGTTTGTTTTCTTCCTCTCGTGCGTTT 200
||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||
Sbjct 121 ATGTTCAATACTTCTGACCACACGAATCATCATGGTTTGTTTTCTTCCTCTCGTGTGTTT 180
Query 201 AATTGTTATCAAGATTCACATGTTTCTTCATCTTCTTTTGATTTCAGCAATTCACATATG 260
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 181 AATTTTTATCAAGATTCACATGTTTCTTCATCTTCTTTTGGTTTCAACAATTCACATATG 240
Query 261 TCTTATCATATGAGAAAAAACATGGTTTCTACTTTTGGGATGCCTTCCACAACT-AAAAT 319
|||||||||||||||||||||||||||| |||||||||||||||| || |||| ||||
Sbjct 241 GCTTATCATATGAGAAAAAACATGGTTTCCACTTTTGGGATGCCTTGCATAACTCAAAA- 299
Query 320 CTCAAATAACCCTCATCTTTCTCAGATCTCTATCACTCAAACTATCAAAAATAGCTATTC 379
|||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||
Sbjct 300 CTCAAATAACCCTCATCTTTCTCAAATCTCTATTACTCAAACTATCACAAATAGCTATTC 359
Query 380 TGCTATTGTTCCTACCAATAATCTTATTACTTCCCAAAATGAATATCAACGTGCCAT-GA 438
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 TGCTATTGTTCCTACCTATAATCTTATTACTTCCCAAAATGAATATCAACGTGCCAAAGA 419
Query 439 ATCCCAACATCTTCAATTCTCCACTTTACCCTCCAAATTTTGTTGA-AAAAGA-GT---- 492
| ||||||||||||||| |||| |||||||||||||||||||||| |||| | ||
Sbjct 420 A-CCCAACATCTTCAATCCTCCTTTTTACCCTCCAAATTTTGTTGACAAAA-ATGTTGGA 477
Query 493 --CC---G--AGATCTTGAATCCTACACCTCTCAATACCATTTTTCCGCATCAAACTTCT 545
|| | ||||||||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct 478 AACCAATGCCAGATCTTGAATCCTACACCCCTCAATACCATTTTTCCACATCAAGCTTCC 537
Query 546 GTATTTCGTAGGAATTTAGACATGTTTTCCTTTTCACCAAAACACCATCCTCACCAATAT 605
|||||| ||||||| |||||| ||||| |||||||||||||| | ||||||||||||
Sbjct 538 ATATTTCCTAGGAATGTAGACAAATTTTCTTTTTCACCAAAACAGAACCCTCACCAATAT 597
Query 606 GTTTCCTATCATCAACCAGTGAAGAA-ACATTGTGGAGCCA-CCAAACATTTTGAAGAA- 662
||||| |||| ||||| |||| || ||||||| || ||| ||||| | |||||| ||
Sbjct 598 GTTTCGTATCGCCAACCCCTGAA-AAGACATTGTAGA-CCAACCAAAAAATTTGAA-AAT 654
Query 663 ACTTTT-GATGATTTTGATTCTAAAGAAA-ATAGTGAATACGATGGTCGGACACATAGCT 720
|||||| | ||||||||||||| | ||| ||| |||||||||||||||||| |||||||
Sbjct 655 ACTTTTAG-TGATTTTGATTCTGGA-AAAGATATTGAATACGATGGTCGGACGCATAGCT 712
Query 721 TACCATATAAAAAATATGGTCCATATACATGTCCTAAATGTAACCGTGTGTTTGATACTT 780
|||||||| | ||||| ||||||||||||||||| ||||||||| |||||||||| ||||
Sbjct 713 TACCATATGAGAAATACGGTCCATATACATGTCCCAAATGTAACAGTGTGTTTGACACTT 772
Query 781 CACAAAAGTTTGCTGCACATATTTCATCGATGCACTACAAAAATGAGACCATCGAAGAGA 840
|||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||
Sbjct 773 CACAAAAGTTTGCTGCACATATATCATCGATGCACTACAAAAATGAGTCCATAGAAGAGA 832
Query 841 AATTTAAGAGATATAATGCAAGGAACAAAAAGAGATCACGTAAAACTAACCATAACCAAA 900
|||||||||||||||||||||||||||||||||||| |||||||| || | |||||
Sbjct 833 AATTTAAGAGATATAATGCAAGGAACAAAAAGAGATTACGTAAAAG-AA--A---CCAAA 886
Query 901 TGATCCATGAGGACTCTCGCAACATCCAACCAGAGGAGAGAGTTGCAAAGGAAAATGGAG 960
|||||||||| || ||| ||| ||||||||||| |||| ||||||| |||||| ||||
Sbjct 887 TGATCCATGAAGAATCTAACAATATCCAACCAGAAGAGATAGTTGCAGAGGAAAGCGGAG 946
Query 961 GCAATAACAACATAGCAAGT 980
|| |||||||||||||||||
Sbjct 947 GCGATAACAACATAGCAAGT 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52057965165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5