BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941819
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23010.1 | Symbols: MAM1, IMS3 | methylthioalkylmalate synth... 2241 0.0
AT5G23020.1 | Symbols: MAM-L, MAM3, IMS2 | 2-isopropylmalate sy... 1513 0.0
> AT5G23010.1 | Symbols: MAM1, IMS3 | methylthioalkylmalate synthase
1 | chr5:7703092-7706896 FORWARD LENGTH=1729
Length=1729
Score = 2241 bits (1213), Expect = 0.0
Identities = 1438/1548 (93%), Gaps = 9/1548 (1%)
Strand=Plus/Plus
Query 1 TCTTTCTTTCTCCTACATACTCCATAGTTATGGCTTCATCACTTCTGACATCTTCCGGTA 60
||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||
Sbjct 54 TCTTT-TTTCTCCTACGTACTCCATAGTGATGGCTTCATCGCTTCTGACATCTTCCGTTA 112
Query 61 TGATCCATACCACCGGTTCCACCGTGGTTGGCCGGTCAGTGTTACCCTTTCAATCTTCCC 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 TGATCCCTACCACCGGTTCCACCGTGGTTGGCCGGTCAGTGTTACCCTTTCAATCTTCCC 172
Query 121 TGCACTCTCTTCGTCTCACCCATCCATACAAGAAGCCGGCATAT-TTCATCTCATGTTGC 179
|||||||||| || || |||||| | |||||||| || |||| | |||||||||||||||
Sbjct 173 TGCACTCTCTCCGCCTGACCCATTCGTACAAGAACCCCGCAT-TGTTCATCTCATGTTGC 231
Query 180 TCTTCTGTATCCAAAAATGGGGCAACTAATGCTACTGATCTCAAACCCGTTGTGGAACGG 239
|||||||| |||||||||| |||||||| | |||||||||||||||||||||||||||||
Sbjct 232 TCTTCTGTGTCCAAAAATGCGGCAACTAGTTCTACTGATCTCAAACCCGTTGTGGAACGG 291
Query 240 TGGCCGGAGTACATACCAAACAAGCTCCCCGAC-AACAACTATGTGCGTGTATTCGACAC 298
||||||||||||||||| |||||||| |||||| | |||||||||||||||||||||||
Sbjct 292 TGGCCGGAGTACATACCGAACAAGCTTCCCGACGGA-AACTATGTGCGTGTATTCGACAC 350
Query 299 GACACTCCGTGATGGTGAACAAGCTCCCGGTGGATCCCTTACTCCGCCGCAGAAGCTAGA 358
||| |||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 351 GACGCTCCGTGACGGTGAACAATCTCCTGGTGGATCCCTCACTCCGCCGCAGAAGCTAGA 410
Query 359 GATTGCCCGGCAGCTTGCTAAACTCCGAGTAGACATCATGGAAGTCGGTTTTCCGGGATC 418
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GATTGCCCGACAGCTCGCTAAACTCCGAGTAGACATCATGGAAGTCGGTTTTCCGGGATC 470
Query 419 ATCTGAAGAAGAGTTAGAAACCGTTAAAACTATCGCTAAGACCGTGGGGAATGAGGTGGA 478
|||||||||||||||||||||| |||| || ||||| ||||| |||||||||||||||||
Sbjct 471 ATCTGAAGAAGAGTTAGAAACCATTAAGACCATCGCCAAGACTGTGGGGAATGAGGTGGA 530
Query 479 TGAGGAAACAGGTTACGTCCCCGTAATATGCGCCATCGCACGAAGCAAACATAGAGACAT 538
||||||||||||||||||||| || ||||||||||| || ||| ||||||||||||||||
Sbjct 531 TGAGGAAACAGGTTACGTCCCTGTGATATGCGCCATAGCTCGATGCAAACATAGAGACAT 590
Query 539 TGAGGCGGCTTGGGAGGCGGTAAAGTACGCGAAGAGGCCAAGGATACTCATATTCACATC 598
||||||| ||||||||||| | ||||||||||||||||||||||||||| ||||||||||
Sbjct 591 TGAGGCGACTTGGGAGGCGCTGAAGTACGCGAAGAGGCCAAGGATACTCGTATTCACATC 650
Query 599 TACTAGTGACATTCACATGAAATATAAGTTGAAAAAGACTAAAGAAGAGGTGATTGAGAT 658
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 651 TACTAGTGACATTCACATGAAATATAAGTTGAAAAAGACTCAAGAAGAAGTGATTGAGAT 710
Query 659 GGCCGTGAGTAGTATCAGGCTCGCTAAAAGCTTGGGCTTCAAAGACATCCAATTTGGGTG 718
||||||||||||||| ||| | |||||||||||||||||||| |||||||| ||||||||
Sbjct 711 GGCCGTGAGTAGTATTAGGTTTGCTAAAAGCTTGGGCTTCAATGACATCCAGTTTGGGTG 770
Query 719 CGAAGATGGCGGCAGGTCGGACAAGGAGTTCCTATGCAAGATTCTAGGAGAAGCAATAAA 778
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 771 CGAAGATGGCGGCAGGTCGGACAAGGATTTCCTATGCAAGATTCTAGGAGAAGCCATAAA 830
Query 779 AGCGGGTGTTACGGTGGTGAACGTCGCAGACACGGTAGGGATCAACATGCCACATGAATA 838
||| |||||||||||||||| | ||| || |||||||||||||||||||||||||||||
Sbjct 831 AGCCGGTGTTACGGTGGTGACCATCGGTGATACGGTAGGGATCAACATGCCACATGAATA 890
Query 839 TGGAGAACTCGTAACCTATCTCAAAGCAAACACTCCTGGAATTGATGATATCGTCTTCAG 898
|| |||||||| || ||||||||||||||||| ||||||||||| ||| | ||| || |
Sbjct 891 CGGGGAACTCGTGACTTATCTCAAAGCAAACACCCCTGGAATTGACGATGTTGTCGTC-G 949
Query 899 -TGTTCATTGTCACAACGATCTTGGTCTTGCTACTGCCAACTCAATCGCCGGTATACGTG 957
|||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 950 CTGTTCATTGTCACAACGACCTTGGTCTTGCAACCGCCAACTCAATCGCCGGTATACGTG 1009
Query 958 CGGGAGCAAGACAAGTGGAAGTAACGATCAACGGAATTGGTGAGAGAAGTGGGAATGCGT 1017
||||||||||||| || |||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 1010 CGGGAGCAAGACAGGTCGAAGTAACTATCAACGGAATTGGTGAAAGAAGTGGCAATGCGT 1069
Query 1018 CGCTTGAAGAGGTCGTGATGGCTTTGAAATGTCGAGGAGCATATGTGATCAATGGTGTTT 1077
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1070 CGCTTGAGGAGGTCGTGATGGCTTTGAAATGTCGAGGGGCATATGTGATCAATGGGGTTT 1129
Query 1078 ACACAAGAATAGACACACGCCAAATTATGGCTACAAGCAAGATGGTTCAAGAGTACACCG 1137
|||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 1130 ACACAAAAATAGACACACGCCAAATCATGGCTACCAGCAAGATGGTTCAAGAGTACACGG 1189
Query 1138 GCTTGTATGTTCAACCACATAAGCCCATAGTTGGAGCCAACTGTTTTGTTCATGAGAGCG 1197
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1190 GCTTGTATGTTCAAGCACATAAGCCCATAGTTGGAGCGAACTGTTTTGTTCATGAGAGCG 1249
Query 1198 GCATTCACCAGGATGGAATATTGAAAAATCGGAGTACATATGAGATCTTATCACCAGAAG 1257
||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1250 GCATTCATCAGGATGGAATATTGAAAAATAGGAGTACTTATGAGATCTTATCACCAGAAG 1309
Query 1258 ATATTGGGGTCGTAAAATCTCAAAACTCCGGCCTTGTTCTTGGAAAGCTTAGTGGACGTC 1317
|||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1310 ATATTGGGATTGTAAAATCTCAAAATTCCGGCCTTGTTCTTGGAAAGCTTAGTGGACGTC 1369
Query 1318 ATGCTGTGAAAGATCGGCTGAACGAGTTGGGATATGAACTCGATGATGAGAAACTGAACG 1377
| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1370 ACGCTGTGAAAGATCGGCTGAAAGAGTTGGGATATGAACTCGATGATGAGAAATTGAACG 1429
Query 1378 AC-GTCTTCTCACGGTTCAGAGATCTAACCAAGCATAAAAAGAGGATCACGGATGCTGAT 1436
| |||||||||| ||||||||| |||||||| |||||||||| |||||||||||||||
Sbjct 1430 -CTGTCTTCTCACTATTCAGAGATTTAACCAAGAATAAAAAGAGAATCACGGATGCTGAT 1488
Query 1437 ATGAAGGCGTTAGTAACATCTAGCGACGAAATCTCTTTAGAGAAATTAAACGGCGCTAAC 1496
||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1489 TTGAAGGCATTAGTAACATCTAGCGATGAAATCTCTTTGGAGAAATTAAACGGCGCTAAC 1548
Query 1497 GGTTTAAAGTCTAACGGCTATGTACCAGTTCCTCAGGTTTCATCAAAT 1544
||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1549 GGTTTAAAGTCTAACGGCTATATACCAGTTCCTCAGGTTTCATCGAAT 1596
> AT5G23020.1 | Symbols: MAM-L, MAM3, IMS2 | 2-isopropylmalate
synthase 2 | chr5:7718121-7721839 FORWARD LENGTH=1799
Length=1799
Score = 1513 bits (819), Expect = 0.0
Identities = 1257/1467 (86%), Gaps = 35/1467 (2%)
Strand=Plus/Plus
Query 1 TCTTTCTTTCTCCTACATACTCCATAGTTATGGCTTCATCACTTCTGACATCTTCCG-GT 59
||||| | |||||||| | ||| ||||| |||||||| | |||||| ||||| | || ||
Sbjct 55 TCTTT-TCTCTCCTACTTTCTCTATAGTAATGGCTTCGTTACTTCTCACATCGT-CGAGT 112
Query 60 ATGATCCATACCAC-CGGT-TC-CACCGTGGTTGGCCGGTCAGTGTTACCCTTTC-AATC 115
||||| | ||||| | | || | || ||||| |||||||| ||||||| || |||
Sbjct 113 ATGAT--A-ACCACTAGCTGTCGCTCCATGGTTCTCCGGTCAGGGTTACCC-ATCGGATC 168
Query 116 TTCCCTGCACTCTCTTCGTCTCACCCATCCATACAAGAAGCCGGCATAT-TTCATCTCAT 174
||| | | ||||||||| || |||| ||||||| | ||| || | | | ||| ||||||
Sbjct 169 TTCTTTTCCCTCTCTTCGCCTGACCCGTCCATACGACAAGGCGAC-TCTGTTCGTCTCAT 227
Query 175 GTTGCTCTTCTGTA-TCCAAAAATGG-GGCAACTAATGCTACTGATCTCAAACCCGTTGT 232
||||||| ||| | |||||||| || |||||||| |||||||||||||||||| | |
Sbjct 228 GTTGCTCCGCTG-AGTCCAAAAA-GGTGGCAACTAGTGCTACTGATCTCAAACCTATCAT 285
Query 233 GGAACGGTGGCCGGAGTACATACCAAACAAGC-TCCCCGACAACAACTATGTGCGTGTAT 291
||||||| ||||||||||||| || ||||||| ||||| |||| ||||||||||||||||
Sbjct 286 GGAACGGAGGCCGGAGTACATTCCGAACAAGCTTCCCC-ACAAGAACTATGTGCGTGTAT 344
Query 292 TCGACACGACACTCCGTGATGGTGAACAAGCTCCCGGTGGATCCCTTACTCCGCCGCAGA 351
| |||||||| || ||||| ||||||||| ||||||||| | | |||||||| |||||||
Sbjct 345 TAGACACGACGCTTCGTGACGGTGAACAATCTCCCGGTGCAGCACTTACTCCACCGCAGA 404
Query 352 AGCTAGAGATTGCCCGGCAGCTTGCTAAACTCCGAGTAGACATCATGGAAGTCGGTTTTC 411
|| ||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 405 AGTTAGAGATTGCCAGGCAGCTAGCTAAACTCCGAGTAGACATCATGGAAGTTGGTTTTC 464
Query 412 CGG-GATCATCTGAAGAAGAGTTAGAAACCGTTAAAACTATCGCTAAGACCGTGGGGAAT 470
||| | || ||||| ||||| || ||| | ||||||| ||||| ||||||||||||||
Sbjct 465 CGGTG-TCGTCTGAGGAAGAATTCGAAGCTATTAAAACCATCGCCAAGACCGTGGGGAAC 523
Query 471 GAGGTGGATGAGGAAACAGGTTACGTCCCCGTAATATGCGCCATCGCACGAAGCAAACAT 530
||||||||||||||||| |||||||| || || ||||||| ||| |||||| ||||| |
Sbjct 524 GAGGTGGATGAGGAAACCGGTTACGTTCCTGTGATATGCGGCATTGCACGATGCAAAAAG 583
Query 531 AGAGACATTGAGGCGGCTTGGGAGGCGGTAAAGTACGCGAAGAGGCCAAGGATACT-CAT 589
|||||||| ||||| |||||||||| | ||||| ||||||||||| ||| || | | |
Sbjct 584 AGAGACATCGAGGCAACTTGGGAGGCACTGAAGTATGCGAAGAGGCCGAGGGTAATGC-T 642
Query 590 ATTCACATCTACTAGTGACATTCACATGAAATATAAGTTGAAAAAGACTAAAGAAGAGGT 649
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 643 ATTCACATCTACTAGTGAAATTCACATGAAATATAAGTTGAAAAAGACTAAAGAAGAAGT 702
Query 650 GATTGAGATGGCCGTGAGTAGTATCAGGCT-CGCTAAAAGCTTGGGCTTCAAAGACATCC 708
||| ||||||||||||| ||| | | | | |||||||||||||||||||||||||||||
Sbjct 703 GATCGAGATGGCCGTGAACAGTGTTAAG-TACGCTAAAAGCTTGGGCTTCAAAGACATCC 761
Query 709 AATTTGGGTGCGAAGATGGCGGCAGGTCGGACAAGGAGTTCCTATGCAAGATTCTAGGAG 768
|||||||||||||||||||||||||| |||| || || || |||| |||||||||||||
Sbjct 762 AATTTGGGTGCGAAGATGGCGGCAGGACGGAGAAAGATTTTATATGTAAGATTCTAGGAG 821
Query 769 AAGCAATAAAAGCGGGTGTTACGGTGGTGAACG-TCGCAGACACGGTAGGGATCAACATG 827
|| | ||||||||||||| || |||| | | || |||||||| ||||||||||||
Sbjct 822 AATCGATAAAAGCGGGTGCAACCACGGTG-GGGTTTGCGGACACGGTCGGGATCAACATG 880
Query 828 CCACATGAATAT-GGAGAACTCGTAACCTATCTCAAAGCAAACACTCCTGGAATTGATGA 886
|| || |||| | ||||||||||| ||||| ||| || ||||||||| || ||||||
Sbjct 881 CCGCAAGAAT-TCGGAGAACTCGTGGCCTATGTCATAGAAAACACTCCAGGGGCTGATGA 939
Query 887 TATCGTCTTCAG-TGTTCATTGTCACAACGATCTTGGTCTTGCTACTGCCAACTCAATCG 945
||| |||||| | |||||||||| ||||| |||||| ||||||| |||||| ||||
Sbjct 940 TATTGTCTTC-GCCATTCATTGTCATAACGACCTTGGTGTTGCTACCGCCAACACAATAT 998
Query 946 CCGGTATACGTGCGGGAGCAAGACAAGTGGAAGTAACGATCAACGGAATTGGTGAGAGAA 1005
|||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 999 CCGGTATATGTGCGGGAGCAAGACAAGTCGAAGTGACGATCAACGGAATTGGTGAAAGAA 1058
Query 1006 GTGGGAATGCGTCGCTTGAAGAGGTCGTGATGGCTTTGAAATGTCGAGGAGCATATGTGA 1065
||||||||||| ||||||||||||||||||||||||||||||||||||||| || | |||
Sbjct 1059 GTGGGAATGCGCCGCTTGAAGAGGTCGTGATGGCTTTGAAATGTCGAGGAGAATCTCTGA 1118
Query 1066 TCAATGGTGTTTACACAAGAATAGACACACGCCAAATTATGGCTACAAGCAAGATGGTTC 1125
| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1119 TGGATGGTGTTTACACAAAAATAGACTCACGCCAAATTATGGCTACAAGCAAGATGGTTC 1178
Query 1126 AAGAGTACACCGGCTTGTATGTTCAACCACATAAGCCCATAGTTGGAGCCAACTGTTTTG 1185
||||| | |||||| |||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1179 AAGAGCATACCGGCATGTATGTTCAACCACATAAGCCAATAGTTGGAGACAACTGTTTTG 1238
Query 1186 TTCATGAGAGCGGCATTCACCAGGATGGAATATTGAAAAATCGGAGTACATATGAGATCT 1245
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1239 TTCATGAGAGCGGCATTCACCAGGATGGAATATTGAAAAATCGAAGTACATATGAGATCT 1298
Query 1246 TATCACCAGAAGATATTGGGGTCGTAAAATCTCAAAACTCCGGCCTTGTTCTTGGAAAGC 1305
|||||||||||||| ||||| ||||||||||| |||| || ||| |||||||||||||||
Sbjct 1299 TATCACCAGAAGATGTTGGGATCGTAAAATCTGAAAATTCTGGCATTGTTCTTGGAAAGC 1358
Query 1306 TTAGTGGACGTCATGCTGTGAAAGATCGGCTGAACGAGTTGGGATATGAACTC-GATGAT 1364
|||| |||||||||||||| ||||| ||||| || ||||||||||||||| || | ||||
Sbjct 1359 TTAGCGGACGTCATGCTGTAAAAGACCGGCTTAAAGAGTTGGGATATGAAATCAG-TGAT 1417
Query 1365 GAGAAACTGAACGACGTCTTCTCACGGTTCAGAGA-TCTAACCAAGCATAAAAAGAGGAT 1423
|||||| | |||||| |||||||||| | |||||| | |||| ||| | |||||||| ||
Sbjct 1418 GAGAAATTCAACGACATCTTCTCACGATACAGAGAAT-TAACGAAGGACAAAAAGAGAAT 1476
Query 1424 CACGGATGCTGATATGAAGGCGTTAGT 1450
||| || |||||| ||||||| |||||
Sbjct 1477 CACAGACGCTGATCTGAAGGCATTAGT 1503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77660243115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5