BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941827
Length=886
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23070.1 | Symbols: | Thymidine kinase | chr5:7741898-77429... 1107 0.0
> AT5G23070.1 | Symbols: | Thymidine kinase | chr5:7741898-7742978
FORWARD LENGTH=1081
Length=1081
Score = 1107 bits (599), Expect = 0.0
Identities = 804/894 (90%), Gaps = 50/894 (6%)
Strand=Plus/Plus
Query 18 CAAATGTTTGGTGTTTCGATGAGAACATTAAtctcaccatctcttgctcctttctctctt 77
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 79 CAAATGTTTGGTGTTTCGATGAGAACATTAATCTCACCATCTCTTGCTCCCTTCTCTCTT 138
Query 78 catctccctaaaccttctctcttctccaccgctcttcgcttctcctccctcACCACTTCC 137
||||||| |||||| ||||||||||||||||||||||||||||||| | | | |
Sbjct 139 CATCTCCATAAACCCTCTCTCTTCTCCACCGCTCTTCGCTTCTCCT---T-----C-T-C 188
Query 138 ACCATCTCAATCAACAACAGATCCCCCACAAATTCACCTCCCTCCGCCATTTCCACCAGA 197
| | |||| |||| | | | ||||||||||||||||||| ||| ||||||||||||||
Sbjct 189 A--A--TCAA-CAAC-ATA-A-CCCCCACAAATTCACCTCCTTCCACCATTTCCACCAGA 240
Query 198 AA---AC-TAC--AA---AC----G--A-A--AGC--GA-C--GGC-GCCGCTCTCCTTC 233
|| || || || || | | | | | | | | ||||||||||| |
Sbjct 241 AAGCTACAAACGAAAGCGACGAGGGTAACATCATCATCATCATCTCAGCCGCTCTCCTCC 300
Query 234 TCAACTCCCGGCGAAATACACGTAATCGTCGGTCCAATGTTCTCCGGTAAAACAACAACG 293
||| ||||||||||||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 301 TCATCTCCCGGCGAAATCCACGTCGTAGTCGGTCCAATGTTCTCCGGTAAAACAACAACA 360
Query 294 CTTCTCCGCCGTATCCTCGCCGAAAGAGAAACCGGTAAACA-AATCGCAATCATCAAATC 352
|||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 361 CTTCTCCGCCGTATACTCGCCGAAAGAGAAACCGGTAAA-AGAATCGCAATCATCAAATC 419
Query 353 CAATAAAGACACAAGATACTGCACCGAATCAATAGTTACTCACGACGGTGAGAAATTCCC 412
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 420 CAACAAAGACACAAGATACTGCACCGAATCAATAGTTACTCACGACGGTGAGAAATACCC 479
Query 413 TTGCTGGCCACTTCCCGATCTCTCGTCCTTCAAAGAGAGGTTCGGATTCGACGACTACGA 472
||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 TTGCTGGTCACTCCCCGATCTCTCGTCCTTCAAAGAGAGATTCGGATTCGACGACTACGA 539
Query 473 GAATCGATTAGATGTGATTGGAATCGACGAGGCTCAATTCTTCGGAGATCTATACGAGTT 532
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 540 GAATCGATTAGATGTGATTGGAATCGACGAAGCTCAATTCTTCGGAGATCTTTACGAGTT 599
Query 533 TTGCCGTGAAGCTGCTGATAAAGAGGGTAAAACTGTAATTGTTGCTGGATTGGATGGTGA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGCCGTGAAGCTGCTGATAAAGAGGGTAAAACTGTAATTGTTGCTGGATTGGATGGTGA 659
Query 593 TTTTAAGCGGAGGAGGTTTGGTTCGGTGCTTGATTTGATTCCGATTGCGGATACGGTTAC 652
||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 TTTTATGAGGAGGAGGTTTGGTTCGGTTCTTGATTTGATTCCGATTGCGGATACGGTTAC 719
Query 653 GAAGCTGACGTCACGGTGTGAGGTTTGTGGGAAGAGAGCTTTGTTTACGATGAGGAAGAC 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAAGCTGACGTCACGGTGTGAGGTTTGTGGGAAGAGAGCTTTGTTTACGATGAGGAAGAC 779
Query 713 GGAGGAGAAAGAGACGGAGTTGATCGGTGGAGCTGAAGTTTATATGCCTGTGTGTCGGAG 772
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 780 GGAGGAGAAAGAGACGGAGTTGATCGGTGGTGCTGAAGTTTATATGCCTGTGTGTAGGAG 839
Query 773 TCATTACGTCTGCGGTCAAAGCGTTTTGGAAACCGCTCGTGCCGTTTTGGATTCTTCAAG 832
||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 840 TCATTACGTTTGCGGTCAAAACGTTTTGGAAACCGCTCGTGCCGTTTTGGATTC---AAG 896
Query 833 CAATAAGCAT-GATGTTGTAGCAAGTTTGCTTTAATGTGTGCGGAGTTGAGAGT 885
|||||| ||| | |||||||||||||| ||||| | ||| ||| ||||||||
Sbjct 897 CAATAATCATAG-TGTTGTAGCAAGTTCACTTTAGTTTGTA-GGATTTGAGAGT 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43251600567
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5