BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941835
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23140.1 | Symbols: CLPP2, NCLPP7 | nuclear-encoded CLP prot... 1214 0.0
> AT5G23140.1 | Symbols: CLPP2, NCLPP7 | nuclear-encoded CLP protease
P7 | chr5:7783738-7785497 FORWARD LENGTH=1470
Length=1470
Score = 1214 bits (657), Expect = 0.0
Identities = 731/765 (96%), Gaps = 12/765 (2%)
Strand=Plus/Plus
Query 2 AGAACAACCCTAGATTCCGATGATGAGGGGTCTTGTTTCCGGTGCCAAGAGGCTATCAT- 60
||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||
Sbjct 55 AGAACAACCCTAGATTCCGATGATGAGGGGTCTCGTTTCCGGCGCCAAGATGCTATCATC 114
Query 61 --CCCCA---TCG-T--CG---AGCATCGCCACTGCTAGAAGAAGCTACAGTCTGATTCC 109
||||| ||| | || ||||||||||||| ||||||||||||||||||||||||
Sbjct 115 AACCCCATCGTCGATGGCGACAAGCATCGCCACTGGTAGAAGAAGCTACAGTCTGATTCC 174
Query 110 GATGGTTATTGAGCACTCATCGCGAGGAGAGAGAGCTTACGACATCTTCTCTCGTTTGCT 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 GATGGTTATTGAGCACTCATCGCGAGGAGAGAGAGCTTACGACATCTTCTCTCGTTTGCT 234
Query 170 CAAGGAGCGTATTATCTGCATCAACGGTCCCATTAATGACGATACGTCTCACGTCGTCGT 229
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 235 CAAGGAGCGTATTATCTGCATCAACGGTCCCATTAATGACGACACATCTCACGTCGTCGT 294
Query 230 CGCTCAGCTTCTTTACCTCGAGTCTGAGAATCCTTCCAAGCCGATCCATATGTATCTCAA 289
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 295 CGCTCAGCTTCTTTACCTCGAGTCTGAGAATCCTTCGAAGCCGATCCATATGTATCTCAA 354
Query 290 TTCACCTGGCGGCCATGTCACCGCCGGTCTTGCAATTTATGATACTATGCAGTACATTCG 349
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TTCCCCTGGCGGCCATGTCACCGCCGGTCTTGCAATTTATGATACTATGCAGTACATTCG 414
Query 350 CTCTCCGATAAGCACAATTTGTTTAGGTCAGGCTGCATCAATGGCTTCTCTGCTCTTGGC 409
||||| || |||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 415 TTCTCCTATTAGCACAATTTGTTTGGGTCAGGCTGCATCAATGGCTTCTCTTCTGTTGGC 474
Query 410 AGCGGGTGCCAAGGGGCAAAGGCGGTCGCTTCCAAATGCAACTGTTATGATTCATCAGCC 469
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 475 AGCGGGTGCCAAGGGGCAAAGGCGGTCACTTCCAAATGCAACTGTTATGATTCATCAGCC 534
Query 470 TTCGGGAGGATATAGCGGACAGGCTAAGGATATAACGATTCATACAAAACAGATTGTTCG 529
||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 535 TTCAGGAGGATATAGTGGACAGGCTAAAGATATAACGATTCATACAAAACAGATTGTTCG 594
Query 530 TGTGTGGGATGCGTTAAATGAACTGTATGTCAAACATACGGGTCAACCTCTTGACGTGGT 589
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 595 TGTGTGGGATGCGTTAAATGAATTGTATGTCAAACACACGGGTCAACCTCTTGACGTGGT 654
Query 590 TGCTAATAACATGGATAGGGATCATTTCATGACTCCTGAAGAGGCTAAGGCGTTTGGAAT 649
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TGCGAATAACATGGATAGGGATCATTTCATGACTCCTGAAGAGGCTAAGGCGTTTGGAAT 714
Query 650 AATCGATGAAGTAATTGATGAAAGACCGTTGGAGTTGGTGAAAGATGCAGTTGGAAATGA 709
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 AATCGATGAAGTGATTGATGAAAGACCGTTGGAGTTGGTGAAAGATGCAGTTGGAAATGA 774
Query 710 AAGCAAAGATAAGAGTTCAAGTTAGGAAGTAACTGGTAATCAAAG 754
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AAGCAAAGATAAGAGTTCAAGTTAGGAAGTAACTGGTAATCAAAG 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36620693163
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5