BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941843
Length=268
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23212.1 | Symbols: | Defensin-like (DEFL) family protein |... 361 2e-99
> AT5G23212.1 | Symbols: | Defensin-like (DEFL) family protein
| chr5:7815405-7815882 REVERSE LENGTH=228
Length=228
Score = 361 bits (195), Expect = 2e-99
Identities = 217/228 (95%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 21 ATGACATCGATGAAACTTCACATTCTTGCTCTTTTTGTCATCGTTTCCTTCCTTGTTAGT 80
|||||||||||||||||||||||| ||||||||| | | || |||||||||||||||| |
Sbjct 1 ATGACATCGATGAAACTTCACATTGTTGCTCTTTGTATTATTGTTTCCTTCCTTGTTAAT 60
Query 81 GCTCAATCCACTCGAATTATGGATGCTTCCTCAGATTGTGAATTCAAAGGACCATGTCAT 140
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GTTCAATCCACTCGAATTATGGATGCTTCCTCAGATTGTGAATTCAAAGGACCGTGTCAT 120
Query 141 AAGAAAGAAGATTGCTATGACTCATGTGGAGTGAACAAACCACCGTTTAACAATGCTTTG 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 AAGAAAGAAGATTGCTATGACTCATGTGGAGTGAACAAACCACCGTTTAACAATGCTATA 180
Query 201 TGTGTACCAGGCAGAGATTCGTTTCAATGTTGTTGTATTTTATCGTGA 248
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGTGTACCTGGCAGAGATTCGTTTCAATGTTGTTGTATTTTATCGTGA 228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12265330756
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5