BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941844

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G23210.1 | Symbols: SCPL34 | serine carboxypeptidase-like 34...   610    3e-174


> AT5G23210.1 | Symbols: SCPL34 | serine carboxypeptidase-like 
34 | chr5:7810683-7815039 FORWARD LENGTH=1911
Length=1911

 Score =  610 bits (330),  Expect = 3e-174
 Identities = 360/375 (96%), Gaps = 0/375 (0%)
 Strand=Plus/Plus

Query  37    TGCAGTGACACTGTCTCATTCTGGTCTGACGCTCCCGCTTCTATGCTTCCAACCTTAAGA  96
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1356  TGCAGTGACACTGTCTCATTCTGGTCTGACGCTCCCGCTTCTATGCTTCCAACCTTAAGA  1415

Query  97    ACACTTGTATCAGCGGGATTACGCGTATGGGTTTTCAGTGGGGATACAGATGGACGAATC  156
             |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  1416  ACACTTGTTTCAGCGGGATTACGCGTATGGGTTTTCAGTGGGGATACAGACGGGCGAATC  1475

Query  157   CCAGTGACCGCAACCAGATACTCATTAAAGAAGCTTGGTCTTAAGATAGTCCAAGACTGG  216
             || ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct  1476  CCCGTGACCGCAACCAGATACTCACTAAAGAAGCTAGGTCTTAAGATAGTCCAAGACTGG  1535

Query  217   ACACCTTGGTACACCAAACTACAGGTCGGAGGGTGGACGGTGGAGTATGATGGGTTAATG  276
             |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  1536  ACACCTTGGTACACCAAACTACAGGTCGGAGGGTGGACGGTGGAGTATGACGGTTTAATG  1595

Query  277   TTTGTGACGGTAAGAGGAGCGGGACACCAAGTTCCGACATTCAAACCTAGAGAAGCTCTT  336
             ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct  1596  TTTGTGACGGTAAGAGGAGCGGGACACCAGGTTCCGACATTTAAACCTAGAGAAGCTCTT  1655

Query  337   CAGCTCGTTCATCATTTTCTAGGCAATAAGAAACTTCCTACATATCCCTTTTGATATATT  396
             |||||| |||||||||||||||||||||||||||||||||| | ||||||||||||| ||
Sbjct  1656  CAGCTCATTCATCATTTTCTAGGCAATAAGAAACTTCCTACTTTTCCCTTTTGATATTTT  1715

Query  397   CTCAACCCACAGATT  411
             ||| |||||||||||
Sbjct  1716  CTCTACCCACAGATT  1730



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19453618863


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5