BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941854

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G23290.1 | Symbols: PFD5 | prefoldin 5 | chr5:7846081-784764...   804    0.0  


> AT5G23290.1 | Symbols: PFD5 | prefoldin 5 | chr5:7846081-7847643 
FORWARD LENGTH=734
Length=734

 Score =  804 bits (435),  Expect = 0.0
 Identities = 471/488 (97%), Gaps = 3/488 (1%)
 Strand=Plus/Plus

Query  11   gagagagaa-aatggcgtcgtcatcgtcgagaggagagatggagaagaTGGGAATCGATC  69
            ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  53   GAGAGAGAAGAATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATGGGAATCGATC  112

Query  70   AGCTGAAAGCGTTGAAGGAGCAAGCGGATCTGGAAGTGAATCTCCTTCAAGATAGTCTTA  129
            |||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct  113  AGCTAAAAGCTTTGAAGGAGCAAGCAGATCTGGAAGTGAATCTTCTTCAAGATAGTCTCA  172

Query  130  ACAACATCCGTACAGCCACCGTCCGTCTTGATGCCGCCGCCGCAGCTCTCAACGATCTCT  189
            |||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct  173  ACAACATCCGTACAGCTACCGTTCGTCTCGATGCCGCCGCCGCAGCTCTCAACGATCTCT  232

Query  190  CTCTTCGACCTCAAGGTAAGAAGATGCTTGTACCACTGACTGCTTCTCTATACGTGCCTG  249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  233  CTCTTCGACCTCAAGGTAAGAAGATGCTTGTACCACTGACTGCTTCTCTATACGTGCCTG  292

Query  250  GGACACTTGATGAAGCTGATAAGGTTTTAGTTGATATTGGCACTGGTTACTTCATCGAGA  309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  293  GGACACTTGATGAAGCTGATAAGGTTTTAGTTGATATTGGCACTGGTTACTTCATTGAGA  352

Query  310  AAACAATGGATGATGGAAAAGATTATTGTCAGAGGAAGATTCA-CTTGCTCAAATCCAAC  368
            |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct  353  AAACAATGGATGATGGAAAAGATTATTGTCAGAGGAAGAT-CAACTTGCTCAAATCCAAC  411

Query  369  TTTGACCAACTTTTTGAGGTCGCAGCGAAAAAGAAAAGCGTGGCAGATGAAGCTGGGATG  428
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  412  TTTGATCAACTTTTTGAGGTCGCAGCGAAAAAGAAAAGCGTGGCAGATGAAGCTGGAATG  471

Query  429  GTCTTGCAGGCCAAAGTTAAACAGTTAACAGCTGCAACCACGTCATGAAAATTCTTCCTT  488
            |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct  472  GTCTTGCAGGCCAAAGTTAAACAGTTAACAGCTGCAACCACGTCGTGAAAATTATTCCTT  531

Query  489  CTCTAGTG  496
            ||||||||
Sbjct  532  CTCTAGTG  539



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23660283237


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5