BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941857
Length=635
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23320.1 | Symbols: ATSTE14, STE14, ATSTE14A, ATPCM, ATICMTA... 893 0.0
> AT5G23320.1 | Symbols: ATSTE14, STE14, ATSTE14A, ATPCM, ATICMTA,
ICMTA, STE14A | homolog of yeast STE14 A | chr5:7853368-7853961
FORWARD LENGTH=594
Length=594
Score = 893 bits (483), Expect = 0.0
Identities = 557/594 (94%), Gaps = 0/594 (0%)
Strand=Plus/Plus
Query 21 ATGACAGAGATCTTCAGTGACACTGGCATCAGACAGTTATCCCAAATGCTACTATCACTT 80
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1 ATGACAGAGATCTTCAGTGACACCAGCATCAGACAGTTATCTCAAATGCTACTATCACTA 60
Query 81 ATCTTCTTCCACACATCCGAATACATTCTAGCCATCGCCATTCATGAAGCATCAAACGTA 140
||||||||||||| |||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 61 ATCTTCTTCCACATATCCGAATACATTCTAGCCATCACCATTCACGGAGCATCAAACGTA 120
Query 141 ACTCTTAGCTCGCTTTTGATCAGTAAGCATTACGCTTTAGCAATGCTTGTGTCGCTGCTC 200
|||||||| |||||||| |||| |||||||||||||||||||||||| ||||||| |||
Sbjct 121 ACTCTTAGTTCGCTTTTAATCACCAAGCATTACGCTTTAGCAATGCTTCTGTCGCTTCTC 180
Query 201 GAATACCTTACAGAGATTATCCTCTTTCCTGGGCTGAAACAACATTGGTGGGTCAGCAAC 260
|||||||| || |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 181 GAATACCTAACGGAGATTATCCTCTTCCCGGGGCTGAAACAACACTGGTGGGTCAGCAAC 240
Query 261 TTTGGACTCATAATGATCATCGCTGGGGAAATCATCAGGAAGGCAGCGATAGTAACAGCT 320
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 241 TTTGGACTCATAATGATCATCGTTGGGGAAATCATCAGGAAGGCAGCGATAATAACAGCG 300
Query 321 GGAAGATCGTTCACACACCTTATAAAGATCAACCACGAAGAGCATCACGCCCTTGTGACT 380
|||||||||||||| ||||| |||||||||||| ||||||||||||||| |||||||||
Sbjct 301 GGAAGATCGTTCACTCACCTCATAAAGATCAACTACGAAGAGCATCACGGGCTTGTGACT 360
Query 381 CACGGTGTGTATAGACTAATGAGGCATCCAAGTTACTGCGGGTTTCTCATCTGGTCGGTC 440
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 CATGGTGTGTATAGACTAATGAGGCATCCAAGTTACTGCGGTTTTCTCATCTGGTCGGTC 420
Query 441 GGGACACAAGTTATGCTCTGTAATCCCGTTTCAACGGTTGTGTTTACGGTTGTCGTGTGG 500
||||||||||||||||||||||| ||||||||| | |||| ||| ||||||||||||||
Sbjct 421 GGGACACAAGTTATGCTCTGTAACCCCGTTTCAGCAGTTGCGTTCGCGGTTGTCGTGTGG 480
Query 501 CGGTTTTTTGCTCAGAGAATACCGTACGAGGAGTATTTTCTGAAGCAGTTTTTTGGGGTA 560
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 CGGTTTTTTGCTCAGAGAATACCGTACGAGGAGTATTTTCTGAATCAGTTTTTTGGGGTA 540
Query 561 CAGTATCTAGAGTATGCAGAGAGTGTTGCTTCTGGTGTTCCATTTGTGAACTGA 614
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 CAGTATCTAGAGTATGCAGAGAGTGTTGCCTCTGGTGTTCCATTTGTGAACTGA 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30642829670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5