BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941859
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23340.1 | Symbols: | RNI-like superfamily protein | chr5:7... 2060 0.0
> AT5G23340.1 | Symbols: | RNI-like superfamily protein | chr5:7856189-7858319
FORWARD LENGTH=1679
Length=1679
Score = 2060 bits (1115), Expect = 0.0
Identities = 1209/1256 (96%), Gaps = 0/1256 (0%)
Strand=Plus/Plus
Query 3 TGATTTTGATCTCTCCGATCATGTCATCGGTCTGTGTTAACGAAGCATTAACCGATGACG 62
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 TGATTTTGATCTTTCCGATCATGTCATCGGTCTGTGTTAACGAAGCATTAACCGATGACG 165
Query 63 AGCTGAGATGGGTATTGTCGAGACTAGACAGTGATAAGGACAAGGAAGTGTTTGGTTTGG 122
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 166 AGCTGAGATGGGTATTGTCGAGACTAGACAGTGATAAAGATAAGGAAGTGTTTGGTTTGG 225
Query 123 TCTGCAAGAGGTGGCTAAATCTGCAGAGCACCGACCGGAAGAAGCTAGCGGTGCGTGCTG 182
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 226 TCTGCAAGAGGTGGCTAAATCTGCAGAGTACCGACCGGAAGAAGCTAGCGGCACGTGCTG 285
Query 183 GTCCACATATGCTCGGCCGTCTCGCTTCTAGGTTCACTCAAATCGTCGAATTGGATTTGT 242
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 GTCCACATATGCTCCGCCGTCTCGCTTCTAGGTTCACTCAAATCGTCGAATTGGATTTGT 345
Query 243 CTCAGTCAATTTCTAGGTCATTTTATCCAGGTGTTACTGATTCTGACCTCGCTGTTATCT 302
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 346 CTCAGTCAATTTCTAGGTCCTTTTATCCAGGAGTTACTGATTCTGACCTCGCTGTTATCT 405
Query 303 CTGAGGGTTTCAAGTGTCTCAGAGTTCTTAATCTTCACAACTGTAAAGGTATTACAGATA 362
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 CTGAGGGATTCAAGTTTCTCAGAGTTCTTAATCTTCACAACTGTAAAGGTATTACAGATA 465
Query 363 CTGGTTTGGCCTCAATTGGAAGGTGTCtttttttACTGCAGTTTTTGGATGTATCCTATT 422
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 466 CTGGATTGGCCTCAATTGGAAGGTGTCTTTCTTTACTGCAGTTTTTGGATGTATCATATT 525
Query 423 GTAGAAAGCTCTCAGATAAAGGATTATCAGCTGTTGCAGAAGGCTGCCATGATCTAAGGG 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 GTAGAAAGCTCTCAGATAAAGGATTATCAGCTGTTGCAGAAGGCTGCCATGATCTAAGGG 585
Query 483 CATTGCATCTAGCGGGTTGTCGTTTCATCACTGATGAATCGCTGAAATCACTCTCTGAGA 542
|||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 586 CATTGCATTTAGCGGGTTGTCGTTTCATCACCGATGAATCGTTGAAATCACTCTCTGAGA 645
Query 543 GATGCCATGATCTTGAAGCTCTCGGGCTACAAGGCTGCACCAATATCACTGATTCAGGCC 602
|||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 646 GATGCCGTGATCTCGAAGCTCTGGGGCTACAAGGCTGCACCAATATCACTGATTCAGGTC 705
Query 603 TTACTGATCTTGTGAAGGGATGCAGGAAGATAAAATCTTTGGACATTAATAAATGTAGCA 662
|| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 706 TTGCTGATCTTGTGAAGGGATGCAGAAAGATAAAATCTTTAGACATTAATAAATGTAGCA 765
Query 663 ATGTGGGAGATGCTGGAGTTTCCAGCGTGGCGAAAGCTTGTGCATCTTCCCTCAAGACGC 722
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 766 ATGTTGGAGATGCTGGAGTTTCGAGCGTGGCGAAAGCTTGTGCATCTTCCCTCAAGACAC 825
Query 723 TCAAATTGCTGGACTGTTACAAAGTTGGGAACGAATCTATATCGTCCCTGGCGCAGTTTT 782
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 826 TCAAATTGCTGGACTGTTACAAAGTCGGGAACGAATCTATATCGTCGCTGGCGCAGTTTT 885
Query 783 GCAAGAATCTGGAAACTCTGATAATCGGTGGATGCAGAGACATCTCTGACGAATCTATCA 842
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 886 GCAAGAATCTGGAAACTCTGATAATCGGTGGATGCAGAGATATCTCTGACGAATCTATCA 945
Query 843 TGTTACTGGCAGATTCCTGTAAAGACAGTCTCAAGAACTTGAGGATGGATTGGTGCTTGA 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 TGTTACTGGCAGATTCCTGTAAAGACAGTCTCAAGAACTTGAGGATGGATTGGTGCTTGA 1005
Query 903 ATATATCTGACGCTTCCCTTAGCTGCATTCTGAAGCAGTGCAGGAACTTGGAGGCTCTAG 962
||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1006 ATATATCTGACTCTTCCCTTAGCTGCATTCTCAAGCAGTGCAAGAACTTGGAGGCTCTAG 1065
Query 963 ATATCGGTTGCTGTGCAGAGGTCACAGACACTGCTTTCCGAGATTTGGGGAGCGACGATG 1022
|||| |||||||||| |||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1066 ATATTGGTTGCTGTGAAGAGGTCACAGACACTGCTTTCCGGGATTTAGGGAGCGACGATG 1125
Query 1023 TTTTGGGATTGAAGGTTCTAAAGGTGAGCAACTGCACAAAGATCACAGTAACAGGGATAG 1082
||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1126 TTTTGGGATTGAAGGTTTTAAAGGTTAGCAACTGCACGAAGATCACAGTAACAGGGATAG 1185
Query 1083 GCAAGCTTTTGGACAAATGCAGTTCCTTGGAGTATCTAGATGTAAGGTCTCTTCCACATG 1142
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1186 GCAAGCTTTTGGACAAATGCAGTTCCCTGGAGTATATAGATGTAAGGTCTCTTCCACATG 1245
Query 1143 TGACAGAAGTGAGATGCAGTGAAGCTGGTTTGGAGTTCCCCAAATGTTGTAAAGTTAACT 1202
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1246 TGACAGAAGTGAGATGCAGTGAAGCTGGTTTGGAGTTCCCAAAATGTTGTAAAGTTAACT 1305
Query 1203 TTTCGGGAAGTTTAACCGAGCCAGATGTTCTGCTTTGATCATTGATGTTGGGATCT 1258
|||| || |||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1306 TTTCAGGTAGTTTAACCGAGCCAGATGTTCTGCTTTGATCGTTGCTGTTGGGATCT 1361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61997673075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5