BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941861
Length=698
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23370.1 | Symbols: | GRAM domain-containing protein / ABA-... 907 0.0
AT5G23350.1 | Symbols: | GRAM domain-containing protein / ABA-... 900 0.0
AT5G23360.1 | Symbols: | GRAM domain-containing protein / ABA-... 787 0.0
AT5G08350.1 | Symbols: | GRAM domain-containing protein / ABA-... 425 2e-118
> AT5G23370.1 | Symbols: | GRAM domain-containing protein / ABA-responsive
protein-related | chr5:7863331-7864271 REVERSE
LENGTH=941
Length=941
Score = 907 bits (491), Expect = 0.0
Identities = 605/660 (92%), Gaps = 8/660 (1%)
Strand=Plus/Plus
Query 1 TCACCACTCAACCCTCCAAGATGACATTGAGTGGAGTTCACCAACAAGTCATTGCATTTC 60
|||| |||||| |||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 51 TCACTACTCAATTCTCCAAGATGACATTGAGCAGAGTTCACCAACAACTCATTACATTTC 110
Query 61 CTGCCCTCAATACTGCTCCGGCCAGTTACTTGCCTGATCCAGCTTCCATCAACAAGCTCC 120
||||| |||| ||| ||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 111 CTGCCGTCAAGACTTCTCCGGCGGGTTACTTGCCTGATCCAGCTTCCATCAACAAGCTTC 170
Query 121 AAATCCCAACTTCTTCAAAGTTTTCTTTAT-TATCAGGCAAAGGAAAATCGATGGC-GCG 178
|||||||||||||||||||||||||||| | || ||||||||||||||||||| || ||
Sbjct 171 AAATCCCAACTTCTTCAAAGTTTTCTTT-TCTAACAGGCAAAGGAAAATCGAT-GCTACG 228
Query 179 AAAGAAG-AAAACTGATAGCTTCACAAACGGAGCTAGAGATCAGGACAAGTTAGGACCAA 237
||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 229 AAAGAAGAAAAAC-GATAGCTTCACAAACGGAGTTAGAGATCAGGACAAGTTAGGACCAA 287
Query 238 AGATAACTGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGAG 297
|| |||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 288 AGCTAACCGAAACAGTCAAGAGAAAACTATCCTTGGGAGCTAGGATCCTTCAAATGGGAG 347
Query 298 GCCTAGAGAAGATTTATAAGCGACTCTTCAAGGTCTGCGATCAAGAGAAACTCTTCAAGG 357
|| |||||||||| ||||| |||||||| |||||| ||||| ||||||||||||||||||
Sbjct 348 GCTTAGAGAAGATCTATAAACGACTCTTTAAGGTCAGCGATGAAGAGAAACTCTTCAAGG 407
Query 358 CGTACCAATGTTACCTATCGACAACCGAAGGTTCCATCGCGGGCCTACTCTTCATCTCAT 417
|||||||||| |||||||| ||||||| |||| ||||||| |||||||||||||| ||||
Sbjct 408 CGTACCAATGCTACCTATCCACAACCGCAGGTCCCATCGCTGGCCTACTCTTCATATCAT 467
Query 418 CAAAGAAGATAGCATTCTGCAGCGAAAGATCGATCAAGGTGACTTCTCCTCAGGGAGATC 477
||||||| || |||||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct 468 CAAAGAAAATTGCATTCTGCAGCGAAAGATCGATCAAGGTGGCTTCTCCTCAAGGAGAGC 527
Query 478 TTACTAGGGTTCACTACAAAGTCTCAATCCCGC-TGTGCAAGATCAATGGAGTGAACCAG 536
| | ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 528 TCAATAGGGTTCACTACAAAGTCTCAATCCC-CTTGTGCAAGATCAATGGAGTGAACCAG 586
Query 537 AGTCAGAACACAAAGAAGCTATCTCAAAAGTACCTTGAAGTTGTCACGGTCGACGGCTTT 596
||||| ||||||| ||||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct 587 AGTCAAAACACAACGAAGCCATCTCAGAAGTACCTTGAAGTAGTCACGGTCGACGGCTTT 646
Query 597 GACTTCTGGTTCATGGGATTCGTGAGCTACCAAAAAGCTTTCAATTGTCTCGAGCAAGCG 656
||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct 647 GACTTCTGGTTCATGGGATTCTTGAGCTACCAAAAAGCTTTCAACTGCCTCGAGCAAGCG 706
> AT5G23350.1 | Symbols: | GRAM domain-containing protein / ABA-responsive
protein-related | chr5:7858253-7859387 REVERSE
LENGTH=1135
Length=1135
Score = 900 bits (487), Expect = 0.0
Identities = 620/684 (91%), Gaps = 10/684 (1%)
Strand=Plus/Plus
Query 1 TCACCACTCAACCCTCCAAGATGACATTGAGTGGAGTTCACCAACAAGTCATTGCATTTC 60
|||| |||||| |||||||||||||| |||| |||||||||||||||| ||||||||||
Sbjct 167 TCACTACTCAATCCTCCAAGATGACACTGAGCAGAGTTCACCAACAAGTTATTGCATTTC 226
Query 61 CTGC-CCTCAATACTGCTCCGGCCAGTTACTTGCCTGATCCAGCTTCCATCAACAAGCTC 119
|||| | ||| |||| | || |||||||||||||| ||||||||||||||||| | |
Sbjct 227 CTGCAGC-CAAGACTGATACGATGAGTTACTTGCCTGACCCAGCTTCCATCAACAACCAC 285
Query 120 CAAATCCCAACTTCTTCAAAGTTTTCTTTA-TT-ATCAGGCAAAGGAAAATCGATGGC-G 176
||||||||||||||||||||| |||| || || | ||||||||||||||||||| || |
Sbjct 286 CAAATCCCAACTTCTTCAAAGGTTTC-ATATTTGA-CAGGCAAAGGAAAATCGAT-GCTG 342
Query 177 CGAAAGAAGAAAACTGATAGCTTCACAAACGGAGCTAGAGATCAGGACAAGTTAGGACCA 236
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 343 CGAAAGAAGAAAACCGATAGCTTCACAAACGGAGCTAGAGATCAGGACAAACTAGGACCA 402
Query 237 AAGATAACTGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGA 296
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 AAGCTAACTGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGA 462
Query 297 GGCCTAGAGAAGATTTATAAGCGACTCTTCAAGGTCTGCGATCAAGAGAAACTCTTCAAG 356
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 GGCTTAGAGAAGATTTATAAGCGACTCTTCAAGGTCTGCGATCAAGAGAAACTCTTCAAG 522
Query 357 GCGTACCAATGTTACCTATCGACAACCGAAGGTTCCATCGCGGGCCTACTCTTCATCTCA 416
||||||||||| || ||||| ||||| | |||| ||||||| ||||| ||||||||||||
Sbjct 523 GCGTACCAATGCTATCTATCCACAACAGCAGGTCCCATCGCAGGCCTCCTCTTCATCTCA 582
Query 417 TCAAAGAAGATAGCATTCTGCAGCGAAAGATCGATCAAGGT-GACTTCTCCTCAGGGAGA 475
||||||||||| ||||| ||||| ||||||||||||||||| | |||||||||| ||||
Sbjct 583 TCAAAGAAGATTGCATTTTGCAGTGAAAGATCGATCAAGGTTG-CTTCTCCTCAAGGAGT 641
Query 476 TCTTACTAGGGTTCACTACAAAGTCTCAATCCCGCTGTGCAAGATCAATGGAGTGAACCA 535
||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 642 TCTCAGTAGGGTTCACTACAAAGTCTCAATCCCATTGTGCAAGATCAATGGAGTGAACCA 701
Query 536 GAGTCAGAACACAAAGAAGCTATCTCAAAAGTACCTTGAAGTTGTCACGGTCGACGGCTT 595
|||||||||||||||||||| ||||||||||||||||||| | ||||| |||| |||
Sbjct 702 GAGTCAGAACACAAAGAAGCCATCTCAAAAGTACCTTGAAATAGTCACAATCGATAACTT 761
Query 596 TGACTTCTGGTTCATGGGATTCGTGAGCTACCAAAAAGCTTTCAATTGTCTCGAGCAAGC 655
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||
Sbjct 762 CGACTTCTGGTTCATGGGATTCGTGAGCTACCAGAAAGCTTTCAACTGTCTCGAGAAAGC 821
Query 656 GTTAAACAATGATGAACAATAAAC 679
| ||||||||||||| ||||||||
Sbjct 822 GCTAAACAATGATGAGCAATAAAC 845
> AT5G23360.1 | Symbols: | GRAM domain-containing protein / ABA-responsive
protein-related | chr5:7861740-7862697 FORWARD
LENGTH=958
Length=958
Score = 787 bits (426), Expect = 0.0
Identities = 612/697 (88%), Gaps = 32/697 (5%)
Strand=Plus/Plus
Query 7 CTCAACCCTCCAAGATGACATTGAGTGGAGTTCACCAACAAGTCATTGCATTTCCTGCCC 66
||||| |||| |||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 64 CTCAATCCTCGAAGATGACATTGAGCAGAGTTCATCAACAAGTTATTGCATTTCCTGCTG 123
Query 67 TCAATACTGCTCCGGCCAGTTACTTGCCTGATCCAGCTTCCATCAACAAGCTCCAAATCC 126
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 124 TCAATACTGCTCCGGTGGGTTACTTGCCTGATCCAGCTTCCATCAACAAGCTTCAAATCC 183
Query 127 CAACTTCTTCAAAGTTTTCTTTATTATCAGGCAAAGGAAAATCGATGGC-GCGAAAGAAG 185
||| | ||| | | |||||| ||||| || | |||||||
Sbjct 184 CAA------C------TTC-----T-T----CAAAGG--TTTCGAT-GCTTCAAAAGAAG 218
Query 186 AAAACTGATAGCTTCACAAACGGAGCTAGAGATCAGGACAAGTTAGGACCAAAGATAACT 245
||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| ||||
Sbjct 219 AAAACCGATAGCTTCACAAACGGAGCAAGAGATCAGGACAAGTTAGGACCCAAGCTAACC 278
Query 246 GAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGAGGCCTAGAG 305
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 279 GAAACAGTAAAGAGAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGAGGCTTAGAG 338
Query 306 AAGATTTATAAGCGACTCTTCAAGGTCTGCGATCAAGAGAAACTCTTCAAGGCGTACCAA 365
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 339 AAGATCTATAAGCGACTCTTCAAGGTCTGCGATAAAGAGAAACTCTTCAAGGCGTACCAA 398
Query 366 TGTTACCTATCGACAACCGAAGGTTCCATCGCGGGCCTACTCTTCATCTCATCAAAGAAG 425
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 399 TGTTACCTATCGACAACAGAAGGTTCCATTGCGGGCCTGCTCTTCATCTCATCAAAGAAG 458
Query 426 ATAGCATTCTGCAGCGAAAGATCGATCAAGGTGACTTCTCCTCAGGGAGATCTTACTAGG 485
|| || ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 459 ATTGCCTTCTGTAGCGAAAGATCGATCAAGGTGACTTCTCCTCAAGGAGATCTCACTAGG 518
Query 486 GTTCACTACAAAGTCTCAATCCCGCT-GTGCAAGATCAATGGAGTGAACCAGAGTCAGAA 544
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 519 GTTCACTACAAAGTCTCAATCCC-CTTGTGCAAGATCAATGGAGTGAACCAGAGTCAGAA 577
Query 545 CACAAAGAAGCTATCTCAAAAGTACCTTGAAGTTGTCACGGTCGACGGCTTTGACTTCTG 604
||| ||||| | |||||| | |||||| ||||| ||||| ||||| || |||||||||
Sbjct 578 CACGAAGAAACCATCTCAGAGGTACCTAGAAGTAGTCACAGTCGATAACTATGACTTCTG 637
Query 605 GTTCATGGGATTCGTGAGCTACCAAAAAGCTTTCAATTGTCTCGAGCAAGCGTTAAACAA 664
|||||||||||||||||||||||| ||||||||||| ||||||||| ||||| ||||| |
Sbjct 638 GTTCATGGGATTCGTGAGCTACCAGAAAGCTTTCAACTGTCTCGAGAAAGCGCTAAACGA 697
Query 665 TGATGAACAATAAACGAAAGGAGCTA--A-TTAGTGC 698
||||| ||||||||| | ||||||| | |||||||
Sbjct 698 GGATGAGCAATAAACGGA-GGAGCTACTAATTAGTGC 733
> AT5G08350.1 | Symbols: | GRAM domain-containing protein / ABA-responsive
protein-related | chr5:2686245-2687251 REVERSE
LENGTH=917
Length=917
Score = 425 bits (230), Expect = 2e-118
Identities = 524/663 (79%), Gaps = 31/663 (5%)
Strand=Plus/Plus
Query 6 ACTCAACCCTC-CAAGATG-ACATTGAGTGGAGTTCACCAACAAGTCATT-GCATTTCCT 62
|||||| |||| |||||| ||| |||| ||||| | |||||||||||| | || |||
Sbjct 61 ACTCAATCCTCTAAAGATGAACA-TGAGCAGAGTTGAACAACAAGTCATTAG-ATATCC- 117
Query 63 GCCCTC-AATACTGCTCCGGCCAGTTACTTGCCTGATCCAGCTTCCA-TCAACAAGCTCC 120
| || | || || |||| | ||||||| |||||||| |||| || | |||||| |||
Sbjct 118 GGCCGCAAAGGCTACTCCCGTGGGTTACTTACCTGATCCGGCTT-CATTTAACAAGTTCC 176
Query 121 AAATCCCAACTTCTTCAAAGTTTTCTTTATTATC-AGGCAAAGGAAAATCGATGGCGCGA 179
| | || ||||||| ||| || | | | | | |||| | ||||||||| | |
Sbjct 177 GAGTTCCGGCTTCTTCCAAGAAATC-TGA--A-CAAAGCAACGTAAAATCGAT-TCTTAA 231
Query 180 AA-GAAGAAAACTGATAGCTTCACAAACGGAGCTAGAGATCAGGA-CAAGTTAGGACCAA 237
|| ||||||||||||| | ||||| ||||||| |||||| || || |||| || ||||||
Sbjct 232 AAGGAAGAAAACTGATGGGTTCACCAACGGAGTTAGAGACCA-GAGCAAGATAAGACCAA 290
Query 238 AGATAACTGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGAG 297
|| |||| ||||| || |||||||||||||| ||||| |||| ||| ||||| | ||||
Sbjct 291 AGCTAACCGAAACTGTGAAGAGAAAGCTATCTTTGGGCGCTAGGATTCTTCAGGTTGGAG 350
Query 298 GCCTAGAGAAGAT-TTATAAGCGACTCTTCAAG-GTCT-GCGATCAAGAGAAACTCTTCA 354
| |||||||||| || ||||| ||||| || || | | || |||||||| ||||
Sbjct 351 GTTTAGAGAAGATCTT-CAAGCGGCTCTT-TAGAGT-TAGTGAAGGTGAGAAACTGTTCA 407
Query 355 AGGCGTACCAATGTTACCTATCGACAACCGAAGGTTCCATCGCGGGCCTACTCTTCATCT 414
| |||||| |||||| | |||||||||| ||| |||| || ||||| ||||||||||
Sbjct 408 AAATGTACCAGTGTTACTTGTCGACAACCGCGGGTCCCATAGCCGGCCTTCTCTTCATCT 467
Query 415 CATCAAAGAAGATAGCATTCTGCAGCGAAAGATCGATCAAGGT-GACTTCTCCTCAGGGA 473
| || ||||| || || ||||||||||| ||||| || ||||| || ||| ||||| |||
Sbjct 468 CTTCCAAGAAAATGGCGTTCTGCAGCGAGAGATCAATAAAGGTGGA-TTCCCCTCAAGGA 526
Query 474 GATCTTACT-AGGGTTCACTACAAAGTCTCAATCCCGC-TGTGCAAGATCAATGGAGTGA 531
|| | || | |||||||||||||||| |||||||| | ||||||||||| | ||||||
Sbjct 527 GA-CATAATCCGGGTTCACTACAAAGTATCAATCCC-CTTGTGCAAGATCGACAGAGTGA 584
Query 532 ACCAGAGTCAGAACACAAAGAAGCTATCTCAAAAGTACCTTGAAGTTGTCACGGTCGACG 591
|||||||||||||||||||||| | ||| || |||||||| ||||| ||||||||||| |
Sbjct 585 ACCAGAGTCAGAACACAAAGAAACCATCACAGAAGTACCTAGAAGTAGTCACGGTCGATG 644
Query 592 GCTTTGACTTCTGGTTCATGGGATTCGTGAGCTACCAAAAAGCTTTCAATTGTCTCGAGC 651
| |||||||||||||||||||| ||| |||||||||| |||||||||||||| || |||
Sbjct 645 GTTTTGACTTCTGGTTCATGGGGTTCTTGAGCTACCAGAAAGCTTTCAATTGCCTTGAG- 703
Query 652 AAG 654
|||
Sbjct 704 AAG 706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33807580931
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5