BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941862
Length=700
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23370.1 | Symbols: | GRAM domain-containing protein / ABA-... 1083 0.0
AT5G23350.1 | Symbols: | GRAM domain-containing protein / ABA-... 889 0.0
AT5G23360.1 | Symbols: | GRAM domain-containing protein / ABA-... 773 0.0
AT5G08350.1 | Symbols: | GRAM domain-containing protein / ABA-... 571 3e-162
> AT5G23370.1 | Symbols: | GRAM domain-containing protein / ABA-responsive
protein-related | chr5:7863331-7864271 REVERSE
LENGTH=941
Length=941
Score = 1083 bits (586), Expect = 0.0
Identities = 665/703 (95%), Gaps = 6/703 (1%)
Strand=Plus/Plus
Query 1 TCACTACTCAATCCTCCAAGATGACATTGAGCA-ATGTTCACCAACAAGTCATTGCATTT 59
|||||||||||| |||||||||||||||||||| | |||||||||||| ||||| |||||
Sbjct 51 TCACTACTCAATTCTCCAAGATGACATTGAGCAGA-GTTCACCAACAACTCATTACATTT 109
Query 60 CCTGCCGTCAAGACTTCTCCGGTGGGTTACTTGCCTGATCCAGCTTCCATCAACGAGCTC 119
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 110 CCTGCCGTCAAGACTTCTCCGGCGGGTTACTTGCCTGATCCAGCTTCCATCAACAAGCTT 169
Query 120 CAAATCCCAACTTCTTCAAAGTTTTCTTTTCTAACAAGCAAAGGAAAATCGATGCTGCGA 179
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 170 CAAATCCCAACTTCTTCAAAGTTTTCTTTTCTAACAGGCAAAGGAAAATCGATGCTACGA 229
Query 180 AAGAAGAAAACCGATAGCTTCACAAACGGAGCTAGAGATCA-GAGCAAGTTAGGACCAAA 238
|||||||||| |||||||||||||||||||| ||||||||| || |||||||||||||||
Sbjct 230 AAGAAGAAAAACGATAGCTTCACAAACGGAGTTAGAGATCAGGA-CAAGTTAGGACCAAA 288
Query 239 ACTAACCGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAGGATCCTTCAAGTGGGAGG 298
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 289 GCTAACCGAAACAGTCAAGAGAAAACTATCCTTGGGAGCTAGGATCCTTCAAATGGGAGG 348
Query 299 CTTAGAGAAGATCTATAAGCGACTCTTTAAGGTCTGCGATGAAGAGAAACTCTTCAAGAC 358
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
Sbjct 349 CTTAGAGAAGATCTATAAACGACTCTTTAAGGTCAGCGATGAAGAGAAACTCTTCAAGGC 408
Query 359 GTACCAATGTTACTTATCAACAACCGCAGGTCCCATCGCGGGCCTACTCTTCATCTCATC 418
||||||||| ||| |||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 409 GTACCAATGCTACCTATCCACAACCGCAGGTCCCATCGCTGGCCTACTCTTCATATCATC 468
Query 419 AAAGAAGATTGCATTCTGCAGCGAGAGATCGATAAAGGTGGCTTCTCCTCAAGGAGATCT 478
|||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 469 AAAGAAAATTGCATTCTGCAGCGAAAGATCGATCAAGGTGGCTTCTCCTCAAGGAGAGCT 528
Query 479 CACTAGGGTTCATTACAAAGTCTCAATCCCATTGTGCAAGATCAATGGAGTGAACCAGAG 538
|| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 529 CAATAGGGTTCACTACAAAGTCTCAATCCCCTTGTGCAAGATCAATGGAGTGAACCAGAG 588
Query 539 TCAGAACACAAAGAAGCCATCTCAGAAGTACCTTGAAGTAGTCACAGTCGACGGCTTTGA 598
||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 589 TCAAAACACAACGAAGCCATCTCAGAAGTACCTTGAAGTAGTCACGGTCGACGGCTTTGA 648
Query 599 CTTCTGGTTCATGGGATTCTTGAGCTACCAAAAAGCTTTCAACTGCCTCGAGCAAGCGCT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 CTTCTGGTTCATGGGATTCTTGAGCTACCAAAAAGCTTTCAACTGCCTCGAGCAAGCGCT 708
Query 659 TTCTCTTAGCTTCGAA-CAATGATAAGCCAATATATATTGCTT 700
||||||||||||| || |||||||||||||| |||||||||||
Sbjct 709 TTCTCTTAGCTTC-AAGCAATGATAAGCCAAGATATATTGCTT 750
> AT5G23350.1 | Symbols: | GRAM domain-containing protein / ABA-responsive
protein-related | chr5:7858253-7859387 REVERSE
LENGTH=1135
Length=1135
Score = 889 bits (481), Expect = 0.0
Identities = 603/662 (91%), Gaps = 8/662 (1%)
Strand=Plus/Plus
Query 1 TCACTACTCAATCCTCCAAGATGACATTGAGCA-ATGTTCACCAACAAGTCATTGCATTT 59
|||||||||||||||||||||||||| |||||| | |||||||||||||| |||||||||
Sbjct 167 TCACTACTCAATCCTCCAAGATGACACTGAGCAGA-GTTCACCAACAAGTTATTGCATTT 225
Query 60 CCTGCCGTCAAGACTTCTCCGGTGGGTTACTTGCCTGATCCAGCTTCCATCAACGAGCTC 119
||||| | ||||||| | || || ||||||||||||| ||||||||||||||| | | |
Sbjct 226 CCTGCAGCCAAGACTGATACGATGAGTTACTTGCCTGACCCAGCTTCCATCAACAACCAC 285
Query 120 CAAATCCCAACTTCTTCAAAGTTTTC-TTTTCTAACAAGCAAAGGAAAATCGATGCTGCG 178
||||||||||||||||||||| |||| | || | ||| ||||||||||||||||||||||
Sbjct 286 CAAATCCCAACTTCTTCAAAGGTTTCATATT-TGACAGGCAAAGGAAAATCGATGCTGCG 344
Query 179 AAAGAAGAAAACCGATAGCTTCACAAACGGAGCTAGAGATCA-GAGCAAGTTAGGACCAA 237
|||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||
Sbjct 345 AAAGAAGAAAACCGATAGCTTCACAAACGGAGCTAGAGATCAGGA-CAAACTAGGACCAA 403
Query 238 AACTAACCGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAGGATCCTTCAAGTGGGAG 297
| ||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 404 AGCTAACTGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGAG 463
Query 298 GCTTAGAGAAGATCTATAAGCGACTCTTTAAGGTCTGCGATGAAGAGAAACTCTTCAAGA 357
||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 464 GCTTAGAGAAGATTTATAAGCGACTCTTCAAGGTCTGCGATCAAGAGAAACTCTTCAAGG 523
Query 358 CGTACCAATGTTACT-TATCAACAACCGCAGGTCCCATCGCGGGCCTACTCTTCATCTCA 416
|||||||||| || | |||| ||||| |||||||||||||| ||||| ||||||||||||
Sbjct 524 CGTACCAATGCTA-TCTATCCACAACAGCAGGTCCCATCGCAGGCCTCCTCTTCATCTCA 582
Query 417 TCAAAGAAGATTGCATTCTGCAGCGAGAGATCGATAAAGGTGGCTTCTCCTCAAGGAGAT 476
||||||||||||||||| ||||| || |||||||| ||||| |||||||||||||||| |
Sbjct 583 TCAAAGAAGATTGCATTTTGCAGTGAAAGATCGATCAAGGTTGCTTCTCCTCAAGGAGTT 642
Query 477 CTCACTAGGGTTCATTACAAAGTCTCAATCCCATTGTGCAAGATCAATGGAGTGAACCAG 536
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 CTCAGTAGGGTTCACTACAAAGTCTCAATCCCATTGTGCAAGATCAATGGAGTGAACCAG 702
Query 537 AGTCAGAACACAAAGAAGCCATCTCAGAAGTACCTTGAAGTAGTCACAGTCGACGGCTTT 596
|||||||||||||||||||||||||| |||||||||||| |||||||| |||| |||
Sbjct 703 AGTCAGAACACAAAGAAGCCATCTCAAAAGTACCTTGAAATAGTCACAATCGATAACTTC 762
Query 597 GACTTCTGGTTCATGGGATTCTTGAGCTACCAAAAAGCTTTCAACTGCCTCGAGCAAGCG 656
||||||||||||||||||||| |||||||||| |||||||||||||| |||||| |||||
Sbjct 763 GACTTCTGGTTCATGGGATTCGTGAGCTACCAGAAAGCTTTCAACTGTCTCGAGAAAGCG 822
Query 657 CT 658
||
Sbjct 823 CT 824
> AT5G23360.1 | Symbols: | GRAM domain-containing protein / ABA-responsive
protein-related | chr5:7861740-7862697 FORWARD
LENGTH=958
Length=958
Score = 773 bits (418), Expect = 0.0
Identities = 584/660 (88%), Gaps = 28/660 (4%)
Strand=Plus/Plus
Query 1 TCACTACTCAATCCTCCAAGATGACATTGAGCA-ATGTTCACCAACAAGTCATTGCATTT 59
||||| |||||||||| |||||||||||||||| | ||||| |||||||| |||||||||
Sbjct 58 TCACTTCTCAATCCTCGAAGATGACATTGAGCAGA-GTTCATCAACAAGTTATTGCATTT 116
Query 60 CCTGCCGTCAAGACTTCTCCGGTGGGTTACTTGCCTGATCCAGCTTCCATCAACGAGCTC 119
||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 117 CCTGCTGTCAATACTGCTCCGGTGGGTTACTTGCCTGATCCAGCTTCCATCAACAAGCTT 176
Query 120 CAAATCCCAACTTCTTCAAAGTTTTCTTTTCTAACAAGCAAAGGAAAATCGATGCTGCGA 179
|||||||||| | ||| | | |||||| |||||||| | |
Sbjct 177 CAAATCCCAA------C------TTC---T-T------CAAAGG--TTTCGATGCTTCAA 212
Query 180 AAGAAGAAAACCGATAGCTTCACAAACGGAGCTAGAGATCA-GAGCAAGTTAGGACCAAA 238
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||| ||
Sbjct 213 AAGAAGAAAACCGATAGCTTCACAAACGGAGCAAGAGATCAGGA-CAAGTTAGGACCCAA 271
Query 239 ACTAACCGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAGGATCCTTCAAGTGGGAGG 298
|||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 272 GCTAACCGAAACAGTAAAGAGAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGAGG 331
Query 299 CTTAGAGAAGATCTATAAGCGACTCTTTAAGGTCTGCGATGAAGAGAAACTCTTCAAGAC 358
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
Sbjct 332 CTTAGAGAAGATCTATAAGCGACTCTTCAAGGTCTGCGATAAAGAGAAACTCTTCAAGGC 391
Query 359 GTACCAATGTTACTTATCAACAACCGCAGGTCCCATCGCGGGCCTACTCTTCATCTCATC 418
||||||||||||| |||| ||||| | |||| |||| |||||||| ||||||||||||||
Sbjct 392 GTACCAATGTTACCTATCGACAACAGAAGGTTCCATTGCGGGCCTGCTCTTCATCTCATC 451
Query 419 AAAGAAGATTGCATTCTGCAGCGAGAGATCGATAAAGGTGGCTTCTCCTCAAGGAGATCT 478
|||||||||||| ||||| ||||| |||||||| |||||| |||||||||||||||||||
Sbjct 452 AAAGAAGATTGCCTTCTGTAGCGAAAGATCGATCAAGGTGACTTCTCCTCAAGGAGATCT 511
Query 479 CACTAGGGTTCATTACAAAGTCTCAATCCCATTGTGCAAGATCAATGGAGTGAACCAGAG 538
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 512 CACTAGGGTTCACTACAAAGTCTCAATCCCCTTGTGCAAGATCAATGGAGTGAACCAGAG 571
Query 539 TCAGAACACAAAGAAGCCATCTCAGAAGTACCTTGAAGTAGTCACAGTCGACGGCTTTGA 598
||||||||| ||||| |||||||||| |||||| ||||||||||||||||| || |||
Sbjct 572 TCAGAACACGAAGAAACCATCTCAGAGGTACCTAGAAGTAGTCACAGTCGATAACTATGA 631
Query 599 CTTCTGGTTCATGGGATTCTTGAGCTACCAAAAAGCTTTCAACTGCCTCGAGCAAGCGCT 658
||||||||||||||||||| |||||||||| |||||||||||||| |||||| |||||||
Sbjct 632 CTTCTGGTTCATGGGATTCGTGAGCTACCAGAAAGCTTTCAACTGTCTCGAGAAAGCGCT 691
> AT5G08350.1 | Symbols: | GRAM domain-containing protein / ABA-responsive
protein-related | chr5:2686245-2687251 REVERSE
LENGTH=917
Length=917
Score = 571 bits (309), Expect = 3e-162
Identities = 564/684 (82%), Gaps = 30/684 (4%)
Strand=Plus/Plus
Query 5 TACTCAATCCTC-CAAGATG-ACATTGAGCA-ATGTTCACCAACAAGTCATT-GCATTTC 60
|||||||||||| |||||| ||| |||||| | ||| | |||||||||||| | || ||
Sbjct 60 TACTCAATCCTCTAAAGATGAACA-TGAGCAGA-GTTGAACAACAAGTCATTAG-ATATC 116
Query 61 CTGCCGTC-AAGACTTCTCCGGTGGGTTACTTGCCTGATCCAGCTTCCA-TCAACGAGCT 118
| |||| | ||| || |||| ||||||||||| |||||||| |||| || | ||| || |
Sbjct 117 CGGCCG-CAAAGGCTACTCCCGTGGGTTACTTACCTGATCCGGCTT-CATTTAACAAGTT 174
Query 119 CCAAATCCCAACTTCTTCAAAGTTTTCTTTTCTAAC-AAGCAAAGGAAAATCGATGCTGC 177
|| | | || ||||||| ||| || | ||| |||||| | ||||||||| ||
Sbjct 175 CCGAGTTCCGGCTTCTTCCAAGAAATC---T-GAACAAAGCAACGTAAAATCGATTCT-T 229
Query 178 GAAA-GAAGAAAACCGATAGCTTCACAAACGGAGCTAGAGATCAGAGCAAGTTAGGACCA 236
||| ||||||||| ||| | ||||| ||||||| |||||| ||||||||| || |||||
Sbjct 230 AAAAGGAAGAAAACTGATGGGTTCACCAACGGAGTTAGAGACCAGAGCAAGATAAGACCA 289
Query 237 AAACTAACCGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAGGATCCTTCAAGTGGGA 296
|| ||||||||||| || |||||||||||||| ||||| |||||||| ||||| || |||
Sbjct 290 AAGCTAACCGAAACTGTGAAGAGAAAGCTATCTTTGGGCGCTAGGATTCTTCAGGTTGGA 349
Query 297 GGCTTAGAGAAGATCTAT-AAGCGACTCTTTAAG-GTCT-GCGATGAAGAGAAACTCTTC 353
|| ||||||||||||| | ||||| |||||| || || | | || | |||||||| |||
Sbjct 350 GGTTTAGAGAAGATCT-TCAAGCGGCTCTTT-AGAGT-TAGTGAAGGTGAGAAACTGTTC 406
Query 354 AAGACGTACCAATGTTACTTATCAACAACCGCAGGTCCCATCGCGGGCCTACTCTTCATC 413
|| | |||||| |||||||| || |||||||| |||||||| || ||||| |||||||||
Sbjct 407 AAAATGTACCAGTGTTACTTGTCGACAACCGCGGGTCCCATAGCCGGCCTTCTCTTCATC 466
Query 414 TCATCAAAGAAGATTGCATTCTGCAGCGAGAGATCGATAAAGGTGGCTTCTCCTCAAGGA 473
|| || ||||| || || ||||||||||||||||| |||||||||| ||| |||||||||
Sbjct 467 TCTTCCAAGAAAATGGCGTTCTGCAGCGAGAGATCAATAAAGGTGGATTCCCCTCAAGGA 526
Query 474 GATC-TCACT-AGGGTTCATTACAAAGTCTCAATCCCATTGTGCAAGATCAATGGAGTGA 531
|| | | | | ||||||| |||||||| |||||||| |||||||||||| | ||||||
Sbjct 527 GA-CAT-AATCCGGGTTCACTACAAAGTATCAATCCCCTTGTGCAAGATCGACAGAGTGA 584
Query 532 ACCAGAGTCAGAACACAAAGAAGCCATCTCAGAAGTACCTTGAAGTAGTCACAGTCGACG 591
|||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| |
Sbjct 585 ACCAGAGTCAGAACACAAAGAAACCATCACAGAAGTACCTAGAAGTAGTCACGGTCGATG 644
Query 592 GCTTTGACTTCTGGTTCATGGGATTCTTGAGCTACCAAAAAGCTTTCAACTGCCTCGAGC 651
| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||
Sbjct 645 GTTTTGACTTCTGGTTCATGGGGTTCTTGAGCTACCAGAAAGCTTTCAATTGCCTTGAG- 703
Query 652 AAG-CGCTTTCTCTTAGCTTCGAA 674
||| | ||||| || ||||| |||
Sbjct 704 AAGGCTCTTTCACTGAGCTTTGAA 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33908049225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5