BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941866
Length=1807
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23400.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 2787 0.0
> AT5G23400.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr5:7880335-7882634 FORWARD LENGTH=2300
Length=2300
Score = 2787 bits (1509), Expect = 0.0
Identities = 1708/1805 (95%), Gaps = 10/1805 (1%)
Strand=Plus/Plus
Query 9 CAATATCCCAAAATGCAAAACCTGAAATGGG-TTT--TGAATCTCTTGTTTGTTTCTTCT 65
||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||
Sbjct 258 CAA-ATCCCAAAATGCAAAACCTGAAATGGGTTTTGATGAATCTCTTGTTTGTTTCTGCT 316
Query 66 CTTGTTCATAATTTTGTTCACTCATCATCACAACAAGTAATCTGTTCAAGCCAAGACAGA 125
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 317 CTTGTTCGTAATTTTGTTCTTTCATCATCACAACAAGTAATCTGTTCAAGCCAAGACAGA 376
Query 126 GAAACACTTCTGGGTTTCAAGTCAAGTATCATCCAGGACACAACTGGAGTTCTAGATTCA 185
| |||||||||||||||||||||||| |||||| |||||||||| |||||||| ||||||
Sbjct 377 GCAACACTTCTGGGTTTCAAGTCAAGCATCATCGAGGACACAACAGGAGTTCTTGATTCA 436
Query 186 TGGGTTGGTAAAGATTGTTGCAATGGAGATTGGGAAGGTGTTCAATGCAATCCGGCCACC 245
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 437 TGGGTTGGTAAAGATTGTTGCAATGGAGATTGGGAAGGTGTTCAATGCAATCCAGCCACC 496
Query 246 GGAAAAGTCACCGGCTTGGTGCTACAATCC-CCAGTGAACGAGCCTACTCTTTACATGAA 304
||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||
Sbjct 497 GGAAAAGTCACCGGCTTGGTGTTACAATCCGCC-GTGAACGAGCCTACTCTCTACATGAA 555
Query 305 AGGTACATTATCGCCTTCACTGGGTAATCTCCGATCTCTTGAGCTTTTGTTGATCACTGG 364
||| |||||||| ||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct 556 AGGCACATTATCACCTTCTTTGGGTAATCTCCGATCTCTTGAGCTTTTGCTGATTACTGG 615
Query 365 AAACAAATTCATCGCTGGTTCGATCCCCAACAGCTTCTCTAATCTGACCAGTCTTCGTCA 424
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 616 AAACAAATTCATCACTGGTTCAATCCCCAACAGCTTCTCTAATCTGACCAGTCTTCGTCA 675
Query 425 GCTCATACTCGATGATAATTCTCTCCAAGGCAATGTTCCTTT-TGCTTTAGGCCATCTTC 483
||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 676 GCTCATACTCGATGATAATTCTCTCCAAGGCAATGTT-CTTTCTTCTTTAGGCCATCTTC 734
Query 484 CATTGTTGGAGACTCTCTCTTTAGCTGGGAATCGCTTCTCAGGTCTTGTCCCGGCGAGTT 543
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CATTGTTGGAGATTCTCTCTTTAGCTGGGAATCGCTTCTCAGGTCTTGTCCCGGCGAGTT 794
Query 544 TTGGAAGCTTGAGAAGCCTTACTACGATGAATTTGGCTCGAAATTCCTTCTCTGGTCCAA 603
|||||||||||||| | |||||||||||||||||||||||||| || |||||||||||||
Sbjct 795 TTGGAAGCTTGAGACGTCTTACTACGATGAATTTGGCTCGAAACTCTTTCTCTGGTCCAA 854
Query 604 TCCCAGTGACTTTCAAGAACCTCCTCAAACTTGAGAATCTTGATCTCAGCTCCAATTTGT 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 TCCCAGTGACTTTCAAGAACCTCCTCAAACTTGAGAATCTTGATCTCAGCTCCAATTTGT 914
Query 664 TATCTGGACCATTCCCAGATTTCATAGGCCAGTTTCAGAATTTAACCAATCTTTATCTCT 723
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 TATCTGGACCAATCCCAGATTTCATAGGCCAGTTTCAGAATTTAACCAATCTTTATCTCT 974
Query 724 CCAGCAACAGATTATCCGGGGGGTTACCAGTTTCTGTTTACGGCTTAAGGAAGCTTCAGA 783
||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| |
Sbjct 975 CCAGCAACAGATTCTCCGGGGTGTTACCAGTTTCTGTTTACAGCTTAAGGAAGCTTCAAA 1034
Query 784 CCATGTCGTTGGAGCGTAATGGTCTGACCGGACCACTCTCGGATCGAATCAGCAATTTGA 843
||||||||||||||||||||||||| |||||||||||||| |||||| ||||| ||||||
Sbjct 1035 CCATGTCGTTGGAGCGTAATGGTCTAACCGGACCACTCTCAGATCGATTCAGCTATTTGA 1094
Query 844 AGTCACTCACTAGCCTTCAGTTAAGCGGCAACAAGTTCATCGGTCACATACCAGCATCCA 903
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1095 AGTCACTCACTAGCCTTCAGCTAAGCGGCAACAAGTTCATCGGTCACATTCCAGCATCCA 1154
Query 904 TTACACAACTGCAGAATCTTTGGTCTCTCAACCTCTCGAGAAACCAGTTCTCTGATCCTC 963
||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1155 TTACAGGACTGCAGAATCTTTGGTCTCTCAACCTCTCAAGAAACCTGTTCTCTGATCCTC 1214
Query 964 TGCCCGCGGTTGTAGGCAGAGGATTCCCTTCTCTACTATCCATCGATCTTTCCTACAACA 1023
|||| | |||| || |||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 1215 TGCCTGTTGTTGGAGCCAGAGGGTTCCCTTCTCTACTGTCCATTGATCTTTCCTACAACA 1274
Query 1024 ACCTTAATCTTGGAGCAATTCCAAGCTGGATCAGAGACAAGCAACTCTCAGATATCAACT 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 ACCTTAATCTTGGAGCAATTCCAAGCTGGATCAGAGACAAGCAACTCTCAGATATCAACT 1334
Query 1084 TGGCTGGTTGCAAACTGAGAGGAACCTTTCCAAAGTTAACAAGACCAACCGCCTTGACCT 1143
| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
Sbjct 1335 TAGCTGGTTGCAAACTGAGAGGAACCTTTCCAAAGCTAACAAGACCAACCACCTTGACGT 1394
Query 1144 CGCTAGATTTGTTTGACAACTTTCTCACAGGTGATGTTTCAGCTTTCCTCACAAGCATGA 1203
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1395 CGCTAGATTTGTCTGACAACTTTCTCACAGGTGATGTTTCAGCTTTCCTTACAAGTTTGA 1454
Query 1204 CCAATCTTCAGAAAGTGAGGCTCTCGAAGAACCAGCTCAGGTTCGATCTCTCCAAGCTGA 1263
||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1455 CCAATGTTCAGAAAGTGAAGCTCTCAAAGAACCAGCTCAGGTTCGATCTCTCCAAGCTGA 1514
Query 1264 AGTTGCCAGAAGGAGTCGCGTCTATTGATCTGAGTTCAAATCTAGTGACCGGGTCGCTTT 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1515 AGTTGCCAGAAGGAGTCGCGTCTATTGATCTGAGTTCAAATCTAGTGACCGGGTCCCTTT 1574
Query 1324 CAAGCCTGTTAAACAACAAGACAAGTAGCTTCTTGGAAGAGGTCCATCTCACCAACAACC 1383
|||||||| |||||||||||||||| || |||||||||||| ||||||||||||||||||
Sbjct 1575 CAAGCCTGATAAACAACAAGACAAGCAGTTTCTTGGAAGAGATCCATCTCACCAACAACC 1634
Query 1384 AAATCTCTGGGAGGATTCCTGATTTCGGAGAAAGCTTGAACCTGAAAGTTCTCAACATAG 1443
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1635 AAATCTCAGGGAGGATTCCAGATTTCGGAGAAAGCTTGAACCTGAAAGTTCTCAACATAG 1694
Query 1444 GGAGCAACAAAATCAGTGGACAAATCCCAAGTTCAATATCAAACCTTGTTGAACTTTTGA 1503
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1695 GAAGCAACAAAATCAGTGGACAAATCCCAAGTTCAATATCAAACCTTGTTGAACTTGTGA 1754
Query 1504 GACTAGACATCTCAAGGAATCACATTACAGGAGGCATACCTGAAGCTATAGGACAGCTTG 1563
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
Sbjct 1755 GACTAGACATCTCAAGGAATCACATAACAGGAGGCATACCTCAAGCTATAGGACAGCTAG 1814
Query 1564 CGCAGCTCAAATGGCTCGACCTCTCGATCAATTCACTCACAGGAAGAATTCCGGATAGCT 1623
| |||||||||||||| || |||||||||||| |||| |||||||| || ||||||||||
Sbjct 1815 CACAGCTCAAATGGCTTGATCTCTCGATCAATGCACTTACAGGAAGGATCCCGGATAGCT 1874
Query 1624 TATTGAACATCAAGACGATAAAACATGCAAGTTTCAGAGCCAACAGGTTGTGTGGACTGA 1683
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| ||
Sbjct 1875 TATTGAACATCAAGACGATCAAACATGCGAGTTTCAGAGCCAACAGATTGTGTGGACAGA 1934
Query 1684 TTCCACAAGGAAGACCATTCAACATCTTTCCTGTAGCTGCTTATCTGCATAACCTTTGCT 1743
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1935 TTCCACAAGGAAGACCATTCAACATCTTTCCTGCAGCTGCTTATCTGCATAACCTTTGCT 1994
Query 1744 TGTGTGGTAAGCCATTACCAGCTTGCAGGAAGACAATGAAGTGAAG-CCAAAACACACGT 1802
||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||| ||
Sbjct 1995 TGTGTGGTAAGCCATTACCAGCTTGTAGGAAGACAATGAAGTGAAAACCAAA-CACAAGT 2053
Query 1803 TCTCA 1807
|||||
Sbjct 2054 TCTCA 2058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89407170645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5