BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941868

Length=558
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G23405.1 | Symbols:  | HMG-box (high mobility group) DNA-bin...   278    5e-74
  AT5G23420.1 | Symbols: HMGB6 | high-mobility group box 6 | chr5...  76.8    2e-13


> AT5G23405.1 | Symbols:  | HMG-box (high mobility group) DNA-binding 
family protein | chr5:7882848-7884353 REVERSE LENGTH=809
Length=809

 Score =  278 bits (150),  Expect = 5e-74
 Identities = 312/386 (81%), Gaps = 27/386 (7%)
 Strand=Plus/Plus

Query  1    GAGACCGAG-AGAAAGTAAGACATGGCAGACGCATCGTCTAAAGTTATCAGTTTTTTCAC  59
            ||||||||| ||| ||||||| ||| | | |||||||||| | | || |||| ||||| |
Sbjct  89   GAGACCGAGAAGAGAGTAAGATATGTCCGGCGCATCGTCTGAGGATAGCAGTATTTTCGC  148

Query  60   TCGCTGT---GA---AGACTGTAACAAGAAAATTCCTGAAGATCTTCTAAGGATGCACAT  113
            |||||||   ||   |||||||||||||||||| |||| ||| ||| |||||||||||||
Sbjct  149  TCGCTGTGAAGACGTAGACTGTAACAAGAAAATACCTGTAGAGCTTGTAAGGATGCACAT  208

Query  114  TTGTTATGCTAGATACGGGTT-CGCAGTGAATCAGGCAGCTC-AAGCTGTGGAGGCACAA  171
            ||||||||||  ||    ||| |  || || || |||||||| | | | ||| | |||||
Sbjct  209  TTGTTATGCT--AT----GTTCCATAG-GACTCTGGCAGCTCGAGGTTTTGG-GACACAA  260

Query  172  TCTCAGGCTAAG-AG--ACGC-AGAAAGGCCAAGAACTCAAACAGGCCACCTCTTACCGC  227
             ||||||||||| ||  || | | |||    ||||| || ||||   || ||||||||| 
Sbjct  261  ACTCAGGCTAAGAAGAAAC-CTACAAACAAGAAGAAGTC-AACA--ACATCTCTTACCGA  316

Query  228  CTTCGTTATCTTCATGAATGGTTTCCGTAAAAGTTTTAGAACAGATTATAATGGTTCATT  287
             || | | |||||||||||  ||||||||||  |||||||||||||||||||||| ||||
Sbjct  317  TTTTGCTGTCTTCATGAATCATTTCCGTAAATCTTTTAGAACAGATTATAATGGTGCATT  376

Query  288  GGTG-AAGGAGGTTTCAAAGATCGGTTGGGAAATGTGGAAGTCTATGACTGAGGAAGAGA  346
            |||| ||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  377  GGTGAAAGAAGG-TTCAAAGATCGGTTGGGAAATGTGGAAGTCTATGACTGAGGATGAGA  435

Query  347  AGAAAGTTTATGTGGATAAAGCTGCT  372
            |||||| |||| | ||||||||||||
Sbjct  436  AGAAAGATTATCTCGATAAAGCTGCT  461


> AT5G23420.1 | Symbols: HMGB6 | high-mobility group box 6 | chr5:7888513-7890180 
REVERSE LENGTH=994
Length=994

 Score = 76.8 bits (41),  Expect = 2e-13
 Identities = 109/138 (79%), Gaps = 19/138 (14%)
 Strand=Plus/Plus

Query  433  TTGATGAT-ACTGATGAGGCTGAGGACAAAGAAGTTAGTTAAGGAA-ACAGATGATGACA  490
            |||| ||| | |||||| | |||||| ||||||||| |   | ||| |||||||||||||
Sbjct  686  TTGACGATGA-TGATGAAGTTGAGGAGAAAGAAGTT-G---A-GAACACAGATGATGACA  739

Query  491  ACAAAGTAGCTGAAGGT-----A-A--A-GAAGAAGAGATTTTGGATGACTACTAGAAAT  541
            | |||| |||||| |||     | |  | |||||||||||||||||||||||||||||||
Sbjct  740  AGAAAGAAGCTGAGGGTAAAGAAGAGGAGGAAGAAGAGATTTTGGATGACTACTAGAAAT  799

Query  542  G-TGATTCTTGTTCTTGT  558
            | | || || ||| ||||
Sbjct  800  GAT-ATGCTCGTTTTTGT  816



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26774800351


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5