BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941869
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23420.1 | Symbols: HMGB6 | high-mobility group box 6 | chr5... 942 0.0
> AT5G23420.1 | Symbols: HMGB6 | high-mobility group box 6 | chr5:7888513-7890180
REVERSE LENGTH=994
Length=994
Score = 942 bits (510), Expect = 0.0
Identities = 558/581 (96%), Gaps = 3/581 (1%)
Strand=Plus/Plus
Query 4 ACCGAG-CAAAGGAAGAAATGGCTGGACCATCGACGACTTCAAACGCACCAAAGCAGAGG 62
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 52 ACCGAGAAAAAGGAAGAAATGGCTGGACCATCGACAACTTCAAACGCACCAAAGCAGAGG 111
Query 63 AAGAGAGTCGAAGCCGAAACTAGCAGCAATACTTCTACTACCTTACGTCGCGCTAAAGAC 122
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 112 AAGAGAGTCGAAGCCGAGACTAGCAGCAACACTTCTACTACCTTACGTCGCGCTAAAGAC 171
Query 123 GGAAGCGCTTTCGCTCTCTGTGAAGGATGTAACAAGAGTGTAGCTGTAGCGCTTATAAGC 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 GGAAGCGCTTTCGCTCTCTGTGAAGGATGTAACAAGAGTGTAGCTGTAGCGCTTATAAGC 231
Query 183 ATGCACAATTGCAGTCTCGATGCTAAAATCAGAG-GCAATCTCGAAGCTCAAGTTGTGGA 241
|||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||||||
Sbjct 232 ATGCACAATTGCAGTCTCGATGCTAAGATCAGAGTG-AATCTCGAAGCACAAGTTGTGGA 290
Query 242 GACACAAGCAGAGGCTAAGAAGAAACCTGCAGAGAAGAAGAAGACAACATCTGATGGACC 301
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 291 GACACAAGCAGAGGCTAAGAAGAAGCCTGCAGAGAAGAAGAAGACAACATCTGATGGACC 350
Query 302 TAAGCCAAAGAGACTTAAGAAAACCAAGGATGAGAAGAAGACCTCTTCTACTTCAAACAA 361
||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct 351 TAAGCCAAAGAGACTTAAGAAAACCAATGATGAGAAGAAGAGCTCGTCTACTTCAAACAA 410
Query 362 GCCTAAACGACCTCTTACCGCTTTCTTTATCTTCATGAATGATTTCCGTAAAACTTTTAA 421
||| || ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 411 GCCCAAGCGACCTCTTACCGCTTTCTTTATCTTCATGAGTGACTTCCGTAAAACGTTTAA 470
Query 422 AACAGAGCATAATGGTTCATTAGCTAAGGATGCTGCGAAGATCGGTGGTGAGAAGTGGAA 481
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 471 GTCAGAGCATAATGGTTCGTTAGCTAAGGATGCTGCAAAGATCGGTGGTGAGAAGTGGAA 530
Query 482 GTCTTTGACTGAGGAAGAGAAGAAAGTTTATCTGGATAAAGCTGCTGAACTTAAGGCAGA 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GTCTTTGACTGAGGAAGAGAAGAAAGTTTATCTGGATAAAGCTGCTGAACTTAAGGCAGA 590
Query 542 GTATAACAAGTCACTGGAAAGCAATGATGCTGATGAGGAAG 582
||||||||||||||||||||| |||||||||||||||||||
Sbjct 591 GTATAACAAGTCACTGGAAAGTAATGATGCTGATGAGGAAG 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29989785759
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5