BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941877 Length=1351 Score E Sequences producing significant alignments: (Bits) Value AT5G23520.1 | Symbols: | smr (Small MutS Related) domain-conta... 1995 0.0 > AT5G23520.1 | Symbols: | smr (Small MutS Related) domain-containing protein | chr5:7929351-7931793 REVERSE LENGTH=1799 Length=1799 Score = 1995 bits (1080), Expect = 0.0 Identities = 1263/1352 (93%), Gaps = 9/1352 (1%) Strand=Plus/Plus Query 1 ATCACTAGTTCGATACAAAGATGTCATGGATGAAAGGTAAATCATCTGGTTGGACTGCGT 60 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 ATCACTAGTTCGGTATAAAGATGTCATGGATGAAAGGTAAATCATCTGGTTGGACTGCGT 291 Query 61 TTGATCTCAAGCAGAGACAGAAACAAGGTCTTGAAAGCGTGGTCAAAGATGATGATCCAT 120 ||||||||||||||||||||||||||||||||||||| | |||| || | |||||||| Sbjct 292 TTGATCTCAAGCAGAGACAGAAACAAGGTCTTGAAAGTGAGGTC---GAGGGTGATCCAT 348 Query 121 TCCCACCTGTCTCAACTAGTGTTAATGCATCCTTAGGTGTAAGAGGAAAGTTGAGAAGAG 180 |||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 349 TCCCACCTGTTTCAACTAGTGTTAATGCATCCTTTGGTGTAAGAGGACGGTTGAGAAGAA 408 Query 181 ACCATGAACCTTCTGAAAAGTCTTTTTCGTCCGTGCTCTTACCTCCTTTGAGATTTCCCG 240 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | Sbjct 409 ACCATGAACCTTCTGAAAAGTCTTTTTCGTCCGTGCTCTTGCCTCCTTCGAGATTTCCGG 468 Query 241 CATTGACAGAGAATAAAGATTGCGGAAACGAAGAACGAGGTGGAGGTTGTAAG-AGAAAA 299 |||||||||||||||| |||||||||||| |||||||||| || ||||| || ||||| Sbjct 469 CATTGACAGAGAATAAGGATTGCGGAAACCAAGAACGAGGGGGTTGTTGT-AGAAGAAAG 527 Query 300 CC-GAGCGCTTCGATTCTGCCGGTAAACAGTCATGATTCAGCCTTCATGAAGCTGAAGGA 358 || || | ||| || ||| ||||||||||||||||||| |||||||| |||||||||||| Sbjct 528 CCGGA-CACTTTGAGTCTCCCGGTAAACAGTCATGATTTAGCCTTCACGAAGCTGAAGGA 586 Query 359 AATGAACAGCTGGGCGGATGATAACTTGATAAGGGATGTATTGTTATCCACCGAAGATAA 418 ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||| | Sbjct 587 AATGAACAGCTGGGCGGATGATAACTTAATAAGGGATGTATTGTTATCCACAGAGGATGA 646 Query 419 TTTTGAGATGGCCTTAGATTTTTTGAAAGGAATGGTTTCTTCTAGTAAGGAAGCTGAGGA 478 |||||| |||||||||| ||||||||||||||||||||||||| ||||||| | |||||| Sbjct 647 TTTTGAAATGGCCTTAGCTTTTTTGAAAGGAATGGTTTCTTCTGGTAAGGAGGATGAGGA 706 Query 479 GCCAACTTCTAAGATTGAGGGTTATTCATCCGATAACAGAAGATCCGAATATAAAACATT 538 ||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||| Sbjct 707 GCCAACTTCAAAGATTGAGGGGTATTCATCCGATAACAGAAGATCGGAATATAGAACATT 766 Query 539 TGGGAAAACTGTTACAAGTTCAGTGAAGATGGCTGCAAGGTCCACATGTGAGGATGCTGG 598 || |||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 767 TGAGAAAACAGTTACAAGTTCGGTGAAGATGGCTGCAAGGTCCACATTTGAGGATGCTGG 826 Query 599 CAAGTACGATTTGCAAGAGAGTGATGGAAGTTTGCCTCTGGTGAATGCATCTGACAGTGA 658 |||||| ||| || || | ||||||||||| | | |||||| ||||||||||||| ||| Sbjct 827 CAAGTATGATCTGGAAAATAGTGATGGAAGCTCGTTTCTGGTCAATGCATCTGACAATGA 886 Query 659 AAAGTTCTCTGATGATATCTCTGAACTAGATAGTATCATTCAGCGGCTTCAGTCCATTCC 718 ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 887 AAAGTTCCCTGATGATATTTCTGAACTAGATAGTATCATTCAGCGGCTTCAGTCCATTCC 946 Query 719 TATAGAACCTGAATGGGAAGAAGATGATCTCTACTTGAGTCATCGAAAGGATGCACTGAA 778 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 947 GATAGAACCTGAATGGGAAGAAGATGATCTATACTTGAGTCATCGAAAGGATGCGCTGAA 1006 Query 779 AATGATGAGATCAGCCGCAAACCATTCAAGAGCTGCCCAAAATGCTTTTCAGAGATATGA 838 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1007 AGTGATGAGATCAGCCTCAAACCATTCAAGAGCTGCCCAAAATGCTTTTCAGAGATATGA 1066 Query 839 TCATGCTTCTGCCAAGCAGCATTCAGAGAAAGCAAGAGAGGACTGGTTAACAGCTGAGAA 898 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 1067 TCATGCTTCTGCCAAGCAGCATTCAGATAAAGCAAGAGAGGACTGGTTAGCAGCTGAGAA 1126 Query 899 GCTAAATGCTGAGGCGGCCAAGAAGATCATAGGTATAACAAATAAGGATAACGACATATG 958 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1127 GCTAAATGCTGAAGCGGCCAAGAAGATCATAGGTATAACAAATAAGGATAATGACATATG 1186 Query 959 GAAGTTGGACCTGCATGGTCTCCATGCAACAGAAGCTGTCCAAGCGTTACAAGAACGTTT 1018 ||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| Sbjct 1187 GAAGTTGGACCTGCATGGTCTCCATGCCACAGAAGCTGTTCAAGCCTTACAAGAACGTTT 1246 Query 1019 GCAAAAGATCGAAGGTCACTTCACTGTGAACCGTTCAGTATCACCAAATAGAGGTAGGTC 1078 ||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1247 GCAAATGATTGAAGGTCACTTTACTGTGAACCGTTCAGTATCACCAAATAGAGGTAGGTC 1306 Query 1079 GAAGAATGCAGCTCTGCGATCTGCATCACAAGAGCCTTTTGGTAGATTAGATGTGGAAGG 1138 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1307 AAAGAATGCAGCTCTGCGATCTGCATCACAAGAGCCTTTTGGTAGATTAGATGAGGAAGG 1366 Query 1139 CATGCACTGTCAAAGAACTTCTTCTAGGGAACT-ACGAAACTCATTGCAGGTTGTAACAG 1197 ||||||||||||||||||||||||||| ||||| | ||||||||||||||||| |||||| Sbjct 1367 CATGCACTGTCAAAGAACTTCTTCTAGAGAACTGA-GAAACTCATTGCAGGTTATAACAG 1425 Query 1198 GTATTGGTAAACACAGTCGCGGACATGCTTCACTTCCTCTAGCCGTGAAGACATTCTTTG 1257 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1426 GTATTGGTAAACACAGTCGCGGACAGGCTTCACTTCCTCTAGCCGTGAAGACATTCTTTG 1485 Query 1258 AAGATAACAGGTATAGGTTTGACGAGACAAGGCCAGGAGTTATCACAGTTCGGCCTAAAT 1317 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1486 AAGATAACAGGTATAGGTTTGACGAGACAAGGCCAGGAGTTATCACAGTGCGGCCTAAAT 1545 Query 1318 TCCGACACTGCTGAAACTTTGATTGATCTCAA 1349 |||||||| ||||||| |||| |||||||||| Sbjct 1546 TCCGACACAGCTGAAAATTTGTTTGATCTCAA 1577 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66515722125 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5