BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941877
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23520.1 | Symbols: | smr (Small MutS Related) domain-conta... 1995 0.0
> AT5G23520.1 | Symbols: | smr (Small MutS Related) domain-containing
protein | chr5:7929351-7931793 REVERSE LENGTH=1799
Length=1799
Score = 1995 bits (1080), Expect = 0.0
Identities = 1263/1352 (93%), Gaps = 9/1352 (1%)
Strand=Plus/Plus
Query 1 ATCACTAGTTCGATACAAAGATGTCATGGATGAAAGGTAAATCATCTGGTTGGACTGCGT 60
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ATCACTAGTTCGGTATAAAGATGTCATGGATGAAAGGTAAATCATCTGGTTGGACTGCGT 291
Query 61 TTGATCTCAAGCAGAGACAGAAACAAGGTCTTGAAAGCGTGGTCAAAGATGATGATCCAT 120
||||||||||||||||||||||||||||||||||||| | |||| || | ||||||||
Sbjct 292 TTGATCTCAAGCAGAGACAGAAACAAGGTCTTGAAAGTGAGGTC---GAGGGTGATCCAT 348
Query 121 TCCCACCTGTCTCAACTAGTGTTAATGCATCCTTAGGTGTAAGAGGAAAGTTGAGAAGAG 180
|||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 349 TCCCACCTGTTTCAACTAGTGTTAATGCATCCTTTGGTGTAAGAGGACGGTTGAGAAGAA 408
Query 181 ACCATGAACCTTCTGAAAAGTCTTTTTCGTCCGTGCTCTTACCTCCTTTGAGATTTCCCG 240
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
Sbjct 409 ACCATGAACCTTCTGAAAAGTCTTTTTCGTCCGTGCTCTTGCCTCCTTCGAGATTTCCGG 468
Query 241 CATTGACAGAGAATAAAGATTGCGGAAACGAAGAACGAGGTGGAGGTTGTAAG-AGAAAA 299
|||||||||||||||| |||||||||||| |||||||||| || ||||| || |||||
Sbjct 469 CATTGACAGAGAATAAGGATTGCGGAAACCAAGAACGAGGGGGTTGTTGT-AGAAGAAAG 527
Query 300 CC-GAGCGCTTCGATTCTGCCGGTAAACAGTCATGATTCAGCCTTCATGAAGCTGAAGGA 358
|| || | ||| || ||| ||||||||||||||||||| |||||||| ||||||||||||
Sbjct 528 CCGGA-CACTTTGAGTCTCCCGGTAAACAGTCATGATTTAGCCTTCACGAAGCTGAAGGA 586
Query 359 AATGAACAGCTGGGCGGATGATAACTTGATAAGGGATGTATTGTTATCCACCGAAGATAA 418
||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||| |
Sbjct 587 AATGAACAGCTGGGCGGATGATAACTTAATAAGGGATGTATTGTTATCCACAGAGGATGA 646
Query 419 TTTTGAGATGGCCTTAGATTTTTTGAAAGGAATGGTTTCTTCTAGTAAGGAAGCTGAGGA 478
|||||| |||||||||| ||||||||||||||||||||||||| ||||||| | ||||||
Sbjct 647 TTTTGAAATGGCCTTAGCTTTTTTGAAAGGAATGGTTTCTTCTGGTAAGGAGGATGAGGA 706
Query 479 GCCAACTTCTAAGATTGAGGGTTATTCATCCGATAACAGAAGATCCGAATATAAAACATT 538
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||
Sbjct 707 GCCAACTTCAAAGATTGAGGGGTATTCATCCGATAACAGAAGATCGGAATATAGAACATT 766
Query 539 TGGGAAAACTGTTACAAGTTCAGTGAAGATGGCTGCAAGGTCCACATGTGAGGATGCTGG 598
|| |||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 767 TGAGAAAACAGTTACAAGTTCGGTGAAGATGGCTGCAAGGTCCACATTTGAGGATGCTGG 826
Query 599 CAAGTACGATTTGCAAGAGAGTGATGGAAGTTTGCCTCTGGTGAATGCATCTGACAGTGA 658
|||||| ||| || || | ||||||||||| | | |||||| ||||||||||||| |||
Sbjct 827 CAAGTATGATCTGGAAAATAGTGATGGAAGCTCGTTTCTGGTCAATGCATCTGACAATGA 886
Query 659 AAAGTTCTCTGATGATATCTCTGAACTAGATAGTATCATTCAGCGGCTTCAGTCCATTCC 718
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 887 AAAGTTCCCTGATGATATTTCTGAACTAGATAGTATCATTCAGCGGCTTCAGTCCATTCC 946
Query 719 TATAGAACCTGAATGGGAAGAAGATGATCTCTACTTGAGTCATCGAAAGGATGCACTGAA 778
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 947 GATAGAACCTGAATGGGAAGAAGATGATCTATACTTGAGTCATCGAAAGGATGCGCTGAA 1006
Query 779 AATGATGAGATCAGCCGCAAACCATTCAAGAGCTGCCCAAAATGCTTTTCAGAGATATGA 838
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 AGTGATGAGATCAGCCTCAAACCATTCAAGAGCTGCCCAAAATGCTTTTCAGAGATATGA 1066
Query 839 TCATGCTTCTGCCAAGCAGCATTCAGAGAAAGCAAGAGAGGACTGGTTAACAGCTGAGAA 898
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1067 TCATGCTTCTGCCAAGCAGCATTCAGATAAAGCAAGAGAGGACTGGTTAGCAGCTGAGAA 1126
Query 899 GCTAAATGCTGAGGCGGCCAAGAAGATCATAGGTATAACAAATAAGGATAACGACATATG 958
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1127 GCTAAATGCTGAAGCGGCCAAGAAGATCATAGGTATAACAAATAAGGATAATGACATATG 1186
Query 959 GAAGTTGGACCTGCATGGTCTCCATGCAACAGAAGCTGTCCAAGCGTTACAAGAACGTTT 1018
||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 1187 GAAGTTGGACCTGCATGGTCTCCATGCCACAGAAGCTGTTCAAGCCTTACAAGAACGTTT 1246
Query 1019 GCAAAAGATCGAAGGTCACTTCACTGTGAACCGTTCAGTATCACCAAATAGAGGTAGGTC 1078
||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1247 GCAAATGATTGAAGGTCACTTTACTGTGAACCGTTCAGTATCACCAAATAGAGGTAGGTC 1306
Query 1079 GAAGAATGCAGCTCTGCGATCTGCATCACAAGAGCCTTTTGGTAGATTAGATGTGGAAGG 1138
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1307 AAAGAATGCAGCTCTGCGATCTGCATCACAAGAGCCTTTTGGTAGATTAGATGAGGAAGG 1366
Query 1139 CATGCACTGTCAAAGAACTTCTTCTAGGGAACT-ACGAAACTCATTGCAGGTTGTAACAG 1197
||||||||||||||||||||||||||| ||||| | ||||||||||||||||| ||||||
Sbjct 1367 CATGCACTGTCAAAGAACTTCTTCTAGAGAACTGA-GAAACTCATTGCAGGTTATAACAG 1425
Query 1198 GTATTGGTAAACACAGTCGCGGACATGCTTCACTTCCTCTAGCCGTGAAGACATTCTTTG 1257
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1426 GTATTGGTAAACACAGTCGCGGACAGGCTTCACTTCCTCTAGCCGTGAAGACATTCTTTG 1485
Query 1258 AAGATAACAGGTATAGGTTTGACGAGACAAGGCCAGGAGTTATCACAGTTCGGCCTAAAT 1317
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1486 AAGATAACAGGTATAGGTTTGACGAGACAAGGCCAGGAGTTATCACAGTGCGGCCTAAAT 1545
Query 1318 TCCGACACTGCTGAAACTTTGATTGATCTCAA 1349
|||||||| ||||||| |||| ||||||||||
Sbjct 1546 TCCGACACAGCTGAAAATTTGTTTGATCTCAA 1577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66515722125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5