BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941887
Length=1510
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23580.1 | Symbols: CDPK9, ATCDPK9, CPK12, ATCPK12 | calmodu... 2368 0.0
AT4G09570.1 | Symbols: CPK4, ATCPK4 | calcium-dependent protein... 429 4e-119
> AT5G23580.1 | Symbols: CDPK9, ATCDPK9, CPK12, ATCPK12 | calmodulin-like
domain protein kinase 9 | chr5:7950202-7952532 REVERSE
LENGTH=1758
Length=1758
Score = 2368 bits (1282), Expect = 0.0
Identities = 1435/1510 (95%), Gaps = 6/1510 (0%)
Strand=Plus/Plus
Query 6 AAAAAGCTCTCAAGAATGGCAAACAAACCAAGAACCAGATGGGTTCTTCCTTACAAGACC 65
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 85 AAAAAGCTCTCAAGAATGGCGAACAAACCAAGAACCAGATGGGTTCTTCCTTACAAGACC 144
Query 66 AAAAACCTTGAAGACAATTACTTTCTTGGTCAAGTTCTCGGACAAGGCCAATTCGGAACC 125
|||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 145 AAAAACGTTGAAGACAATTACTTTCTTGGTCAAGTCCTTGGACAAGGCCAATTCGGAACC 204
Query 126 ACTTTCCTCTGTACCCATAAACAGACAGGTCAAAAGCTTGCCTGCAAATCCATACCCAAA 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 ACTTTCCTCTGTACCCATAAACAGACAGGTCAAAAGCTTGCCTGCAAATCCATACCCAAA 264
Query 186 AGGAAACTCATTTGCCAAGAAGATTACGACGACGTTATGAGGGAGATCCAGATAATGCAT 245
||||| ||| |||| ||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 265 AGGAAGCTCCTTTGTCAAGAAGATTACGACGACGTTCTGAGAGAGATCCAGATAATGCAT 324
Query 246 CACTTGTCTGAATACCCCAACGTTGTCCGTATAGAAAGTGCCTATGAGGACACCAAAAGC 305
||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||| |
Sbjct 325 CACTTGTCTGAATACCCCAACGTTGTCCGTATAGAGAGTGCGTACGAGGACACCAAAAAC 384
Query 306 GTGCATCTTGTGATGGAGCTCTGTGAAGGTGGTGAGTTGTTTGATAGAATTGTGAAGACA 365
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
Sbjct 385 GTGCATCTTGTGATGGAGCTTTGTGAAGGAGGTGAGTTGTTTGATAGAATTGTGAAGAGA 444
Query 366 GGTCATTACAGTGAGAGAGAAGCTGCGAAGCTTATTAAGACCATTGTTGGGGTCGTTGAG 425
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 445 GGTCATTACAGTGAAAGAGAAGCTGCTAAGCTTATCAAGACCATTGTTGGGGTTGTTGAG 504
Query 426 GCTTGTCACTCTCTTGGTGTTGTTCATAGAGATCTTAAGCCTGAGAATTTCTTGTTTGCT 485
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 505 GCGTGTCACTCTCTTGGTGTTGTTCATAGAGATCTTAAGCCTGAGAATTTCTTGTTTTCT 564
Query 486 TCTTGTGCTGAAGATGCTTCTCTTAAATCTACCGACTTTGGCCTCTCTGTTTTCTGCAAA 545
|||| || |||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 565 TCTTCTGATGAAGATGCTTCTCTTAAATCTACTGACTTTGGCCTCTCTGTTTTCTGCACA 624
Query 546 CCAGGCGAAGCATTTTCGGAACTCGTTGGTAGTGCCTACTATGTGGCACCTGAGGTTTTA 605
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 625 CCAGGAGAAGCATTTTCGGAACTCGTTGGTAGTGCTTACTATGTGGCACCTGAGGTTTTA 684
Query 606 CATAAGCATTATGGCCCTGAATGTGACGTATGGAGCGCTGGAGTTATCCTCTACATTCTC 665
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 685 CATAAGCATTATGGTCCTGAATGTGACGTATGGAGTGCTGGAGTTATCCTCTACATTCTC 744
Query 666 CTATGTGGTTTTCCTCCTTTCTGGGCTGAGAGTGAAATTGGCATCTTCAGAAAGATTTTA 725
||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 745 TTATGTGGTTTTCCTCCTTTTTGGGCTGAGAGTGAAATAGGCATCTTCAGGAAGATTTTA 804
Query 726 CAGGGAAAGCTGGAGTTTGAGATCAATCCTTGGCCTACCATTTCAGAGAGTGCCAAAGAT 785
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 805 CAGGGAAAGTTGGAGTTTGAGATCAATCCTTGGCCTAGCATTTCAGAGAGTGCCAAAGAT 864
Query 786 CTTATAAAGAAAATGCTCGAAAGCAATCCAAAAAAGAGGCTAACTGCTCATCAAGTGTTG 845
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 865 CTTATAAAGAAAATGCTTGAAAGCAATCCTAAAAAGAGGCTAACTGCTCATCAAGTGTTG 924
Query 846 TGTCACCCGTGGATTGTGGATGATAAGGTTGCTCCAGATAAACCTTTGGACTGCGCAGTA 905
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 925 TGTCATCCGTGGATTGTGGATGATAAGGTTGCTCCAGATAAACCTTTGGACTGCGCGGTA 984
Query 906 GTGTCCCGTCTGAAAAAGTTCTCTGCGATGAACAAACTTAAGAAGATGGCTTTGCGGGTG 965
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 985 GTGTCCCGCCTGAAGAAGTTCTCTGCAATGAACAAACTTAAGAAGATGGCTTTACGAGTT 1044
Query 966 ATTGCAGAGAGACTATCTGAGGAAGAAATCGGTGGGCTCAAAGAACTGTTCAAAATGATA 1025
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1045 ATTGCAGAGAGACTATCTGAGGAAGAAATCGGTGGTCTCAAAGAACTGTTCAAAATGATA 1104
Query 1026 GACACAGATAAAAGCGGGACCATTACATTTGAAGAGTTAAAAGACAGTATGAGACGTGTT 1085
|||||||||||||| ||||| || || ||||||||||||||||| |||||||||||||||
Sbjct 1105 GACACAGATAAAAGTGGGACTATCACGTTTGAAGAGTTAAAAGATAGTATGAGACGTGTT 1164
Query 1086 GGGTCAGAGCTTATGGAATCAGAGATCCAAGAACTCTTGCGTGCCGCTGATGTTGATGAA 1145
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1165 GGGTCAGAGCTTATGGAATCAGAGATCCAAGAACTCTTGCGTGCGGCTGATGTTGATGAG 1224
Query 1146 AGTGGAACAATTGACTATGGAGAGTTCTTAGCTGCAACAATCCACTTGAACAAGCTGGAG 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 AGTGGAACAATTGACTATGGAGAGTTCTTAGCTGCAACAATCCACTTGAACAAGCTGGAG 1284
Query 1206 AGAGAGGAGAATCTAGTAGCTGCATTCTCTTTCTTTGACAAAGATGCAAGTGGTTACATT 1265
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1285 AGAGAGGAGAATCTAGTAGCTGCATTCTCTTTCTTTGATAAGGATGCAAGTGGTTACATC 1344
Query 1266 ACTATCGACGAGCTTCAACAGGCATGGAAGGAGTTTGGTATAAAAGATTCAAATCTTGAT 1325
|||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1345 ACTATCGAAGAGCTTCAACAGGCATGGAAGGAGTTTGGTATAAACGATTCTAATCTTGAT 1404
Query 1326 GAAATGATCAAAGACATTGATCAAGACAATGATGGACAAATAGACTATGGAGAATTTGTG 1385
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1405 GAAATGATCAAAGACATTGATCAAGATAATGATGGACAAATAGACTATGGAGAATTTGTG 1464
Query 1386 GCAATGATGAGGAAAGGAAATGGCAAC-GGAGG-G--ATTGGTCGGAGAACTATGAGGAA 1441
||||||||||||||||||||||||| | ||||| | |||||||||||||||||||||||
Sbjct 1465 GCAATGATGAGGAAAGGAAATGGCA-CTGGAGGAGGGATTGGTCGGAGAACTATGAGGAA 1523
Query 1442 CACTCTCAACTTTGAAACTGCTCTTCCTGATGACTCAATGAATGTCTAAATTACTGATTT 1501
| |||||||||||| |||| ||||||||||||| || |||||||||| || |||| ||||
Sbjct 1524 CTCTCTCAACTTTGGAACTACTCTTCCTGATGAGTCTATGAATGTCTGAAGTACTCATTT 1583
Query 1502 T-AGTGAAAA 1510
| ||||||||
Sbjct 1584 TTAGTGAAAA 1593
> AT4G09570.1 | Symbols: CPK4, ATCPK4 | calcium-dependent protein
kinase 4 | chr4:6049517-6052335 FORWARD LENGTH=1700
Length=1700
Score = 429 bits (232), Expect = 4e-119
Identities = 806/1077 (75%), Gaps = 64/1077 (6%)
Strand=Plus/Plus
Query 313 TTGTGATGG-AGCTCTGTGAAGGTGGTGAG-TTGTTTGATAGAATTGTGAAGACA-GGTC 369
|||| |||| || | ||||||||||||||| || |||||| | ||||| | | |||
Sbjct 345 TTGTTATGGAAG-TTTGTGAAGGTGGTGAGCTT-TTTGATCGGATTGTTTCTAAAGGGT- 401
Query 370 ATTACAGTGAGA-GAGAAGCTGCGAAGCTT-ATTAAGACCATTGTTGGGGTCGTTGAGGC 427
|| ||||| | | |||||||| ||| || |||||||| ||| |||| || ||||||||
Sbjct 402 GTTTTAGTGA-ACGTGAAGCTGCTAAG-TTGATTAAGACTATTCTTGGTGTTGTTGAGGC 459
Query 428 TTGTCACTCTCTTGGTGTTGTTCATAGAGATCTTAAGCCTGAGAATTTCTTGTTTGCT-- 485
|||||| |||||||||||| | |||||||||||||||||||||||||||||||||| |
Sbjct 460 TTGTCATTCTCTTGGTGTTATGCATAGAGATCTTAAGCCTGAGAATTTCTTGTTTGATAG 519
Query 486 TCTTGTGCTGAAGATGCTTCTCTTAAATCTACCGACTTTGGCCTCTCTGTTTTCTGCAAA 545
|| | ||| |||||| |||||| |||| |||||||| | ||||| |||| |||
Sbjct 520 TCCCA-G-TGATGATGCTAAGCTTAAAGCTACAGACTTTGGTTTGTCTGTCTTCTACAAG 577
Query 546 CCAGGCGAAGCATTT-TCGGAACTCGTTGGTAGTGCC-TACTATGTGGCACCTGAGGTTT 603
||||| | || || | | || | ||||| ||| || || ||||| ||||||||||||
Sbjct 578 CCAGG-GCAGTATCTGTATGATGTAGTTGGAAGT-CCGTATTATGTTGCACCTGAGGTTC 635
Query 604 T-ACATAAGCATTATGGCCCTGA-ATGTGACGTATGGAGCGCTGGAGTTATCCTCTACAT 661
| | | || |||||| || || || ||||| |||||||| || |||||| | |||||
Sbjct 636 TGA-AGAAATGTTATGGACCAGAGATA-GACGTGTGGAGCGCCGGTGTTATCTTGTACAT 693
Query 662 TCTC-CTATGTGGTTTTCCTCCTTTCTGGGCTGAGAGTGAAATT-GGCATCTTCAGAAAG 719
|| ||| |||| |||||||||| ||||| || | || | || ||||| || ||
Sbjct 694 -CTTACTAAGTGGGGTTCCTCCTTTTTGGGCAGAAACCGAG-TCAGGAATCTTTAGGCAG 751
Query 720 ATTTTACA-GGGAAAGCTGGAGTTTGAGATCA-ATCCTTGGCCTACCATTTCAGAGAG-T 776
|| || || ||||| | | || ||| | ||| |||| |||||||| || ||||| || |
Sbjct 752 ATATTGCAAGGGAA-GATAGATTTTAA-ATCTGATCCGTGGCCTACTATCTCAGA-AGGT 808
Query 777 GCCAAAGATCTT-ATAAAGAAAATGCTCGAAAGCAATCCAAAAAAGAGGCTAA--CTGCT 833
|| |||||| || || | ||||||||||| || | || || || | | || ||||
Sbjct 809 GCTAAAGAT-TTGATTTACAAAATGCTCGATAGGAGCCCCAAGAA-ACG-TATTTCTGCA 865
Query 834 CATCAAGTGTTGTGTCACCCGTGGATTGTGGATGATA-AGGTTGCTCCAGATAAACCTTT 892
||| ||| ||||||||||| |||||||| ||||| | | | ||| ||||| || ||| |
Sbjct 866 CATGAAGCATTGTGTCACCCTTGGATTGTTGATGA-ACATGCTGCACCAGACAAGCCTCT 924
Query 893 GGACTGC-GCAGTAGTGTCCCGTCTGAAAAAGTTCTCTGCGA-TGAACAAACTTAAGAAG 950
||| | ||||| |||| || || || ||||||| || | |||| ||| | |||||
Sbjct 925 CGACC-CAGCAGTCTTGTCGCGACTTAAGCAGTTCTC-GCAAATGAATAAAATCAAGAAA 982
Query 951 ATGGCTTTGCGGGTGATTGCAGAGAGACTATCTGAGGAAGAAATCGGTGGGCTCAAAGAA 1010
||||| || || || || || |||||||| || |||||||| || ||||| || || |||
Sbjct 983 ATGGCCTTACGAGTAATCGCGGAGAGACTCTCGGAGGAAGAGATTGGTGGTCTGAAGGAA 1042
Query 1011 CTGTTCAAAATGATAGACACAGATAAAAGCGGGACCATTACATTTGAAGAG-TTAAAAGA 1069
|||||||||||||||| ||||| || || || || || || ||||||||| ||||| |
Sbjct 1043 TTGTTCAAAATGATAGATACAGACAACAGTGGAACAATCACCTTTGAAGAGCTTAAA-G- 1100
Query 1070 CAG-TATGA-GACGTGTTGGGTCAGAGCTT-ATGGAATCAGAGATCCAAGAACTCTTGCG 1126
||| | | | || | ||||| || || || ||||||||||| ||| ||| ||||| |
Sbjct 1101 CAGGTCTAAAGA-GAGTTGGATCTGAA-TTGATGGAATCAGAAATC-AAGT-CTCTTATG 1156
Query 1127 --TGCCGCTGATGTTGATGAA-AGTGGAACAATTGACTATGGAGAGTTCTTAGCTGCAAC 1183
||| || ||| | || || ||||| ||||| ||||| || || ||| |||| || ||
Sbjct 1157 GATGCGGCGGATATAGAC-AACAGTGGGACAATAGACTACGGTGAATTCCTAGCAGCGAC 1215
Query 1184 AATCCACT-TGAACAAGCTGGAGAGAGAGGAGAATCTAG-TAGCTGCATTCTCTTTCTTT 1241
| | || | | |||||| |||||||||| ||||| || | | | ||| || || | ||||
Sbjct 1216 ATTACA-TATAAACAAGATGGAGAGAGAAGAGAA-CTTGGTGGTTGCGTTTTCATACTTT 1273
Query 1242 GACAAAGATGCAAGTGGTTACATTACTATCGACGAGCTTCAACAGGCATGGA-AGGAGTT 1300
|| ||||||| || ||||| || || || |||||||||||||| || || | || ||||
Sbjct 1274 GATAAAGATGGTAGCGGTTATATCACCATTGACGAGCTTCAACAAGCCTGCACAG-AGTT 1332
Query 1301 TGGTATAAAAGATTCAAATCTTGATGAAATGATCAAAGACATTGATCAAGACAATGA 1357
|||| | || | ||||||||| ||||||||||| ||||||| || |||||
Sbjct 1333 TGGTCTCTGTGACACTCCTCTTGATGACATGATCAAAGAGATTGATCTTGATAATGA 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74497608780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5