BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941888
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23590.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 1413 0.0
> AT5G23590.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr5:7953529-7955640 REVERSE LENGTH=1489
Length=1489
Score = 1413 bits (765), Expect = 0.0
Identities = 888/948 (94%), Gaps = 6/948 (1%)
Strand=Plus/Plus
Query 5 TTAGAAGAAGAAAGAAATGGAGGGTTTTGTTGATCACTATATAGTTCTAGGTTTACCCTC 64
|||||||||||||||||||||||||||||| |||||||| || |||||||||||| | ||
Sbjct 242 TTAGAAGAAGAAAGAAATGGAGGGTTTTGTCGATCACTACATTGTTCTAGGTTTAGCTTC 301
Query 65 GGGAGAGGAAGCTCTCAAGCTTACCGAGAAGGAGATTGCAAAAGCATACAAGTTGAAAGC 124
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TGGAGAGGAAGCTCTGAAGCTTACCGAGAAGGAGATTGCAAAAGCATACAAGTTGAAAGC 361
Query 125 TTTGGACTTGCATCCTGATAAACGCCCTGATGATCCTGATGCTCATGACAAATTTCAGAG 184
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 362 TTTGGACTTGCATCCTGATAAACGCCCTGATGATCCTGATGCCCATGAGAAATTTCAGAG 421
Query 185 GCTTAAGACATCTTACGAGGTTCTCAAAGACGAGAAAGCCCGGAAGCTGTTTGATGATCT 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GCTTAAGACATCTTACGAGGTTCTCAAAGACGAGAAAGCCCGGAAGCTGTTTGATGATCT 481
Query 245 CCTTAGAATCCAGCGTGAGAAACAGCATAAGAAATCGCAAGTAGATTCCAAGAGGCGTAA 304
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 482 TCTTAGAATCCAGCGTGAGAAACAACATAAGAAATCGCAAGTAGATTCCAAGAGGCGTAA 541
Query 305 GATGATGTCAGATCTCGAGCAAAGGGAGCGTTCTGCTTTTTCTCCTGATCCTGCGGCTAG 364
||||||||||||||| ||| |||||||||||||||||||||||||| ||||| | |||||
Sbjct 542 GATGATGTCAGATCTGGAGGAAAGGGAGCGTTCTGCTTTTTCTCCTAATCCTTCCGCTAG 601
Query 365 AGCTTATGATGAGGAAGAGAGAATCGCAAGGAAG-TTGAAGGAGGAGATAGAGAGGATTC 423
|||||||||||| |||||||||||||| |||||| || |||||||||||||| ||||| |
Sbjct 602 AGCTTATGATGAAGAAGAGAGAATCGCTAGGAAGCTT-AAGGAGGAGATAGATAGGATAC 660
Query 424 GTGCAAGACATGCGAAGAAGAAAGGCGGTTTCGAAACTCCAGAGAGTGGTGTAGATGGAA 483
||||||||||||||||||||||| | |||||| |||||||||||||| |||||||| ||
Sbjct 661 GTGCAAGACATGCGAAGAAGAAAAGTGGTTTCCAAACTCCAGAGAGTAATGTAGATGAAA 720
Query 484 AGAGAAAAGAAGAAAGAAGCGGTACTGGAGCTAGTGTTCAACTCGATAAAGAGAGAGTGT 543
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||
Sbjct 721 AGAGAAAAGAAGAAAGAAGTGGTGCTGGAGCTAGTGTTCAACTCGATAAAGAGAGAATGT 780
Query 544 TGAAGGTTTCTTGGGAAACAATTGGTGAAGGGTATACTGCAGGAAGGCTCAGACAAGTTT 603
|||||||||||||||||| || ||||||||||||||| || |||||||| ||| |||| |
Sbjct 781 TGAAGGTTTCTTGGGAAAAAAGTGGTGAAGGGTATACAGCTGGAAGGCTAAGAGAAGTGT 840
Query 604 TTTCAGAGTTTGGTGAGGTTGAAGATGTTGTTATTAGGAGTACCAAGAAGAAATGCTCTG 663
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 841 TTTCTGAGTTTGGTGAGGTTGAAGATGTTGTTATTAGGAGTACCAAGAAGAAATGTTCTG 900
Query 664 CTCTTATTGTAATGGCTACAAAGGATGGAGCTGTTGCAGCGACGAGGACATTGTGTGGGG 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTCTTATTGTAATGGCTACAAAGGATGGAGCTGTTGCAGCGACGAGGACATTGTGTGGCA 960
Query 724 ATCTTTCTAATCCATTGCTGGTTGTACCTCTTCAGAAAGCAGCCCAAAAC-GATTTTCTG 782
||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 961 ATCTTTCTAATCCATTGTTGGTTGTACCTCTTCAGAAAGCAGCCCAAA-CTGATTTTCTG 1019
Query 783 ACCGCTAAGAAATCTGCAGAAGCAGAACCGCAGAGTAACATAGTAGGTGCTGGTCTTCAA 842
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1020 ACGGCTAAGAAATCTGCAGAAGCAGAACCGCAGAGTAACATAGTAGGTGCCGGTCTTCAA 1079
Query 843 GCTTATGAAGACGCTGTCATGCAAAGACTTCGAAAGGCAGCAATGGACCAGAAAAATCGA 902
||||||||||| || |||||||||||||| | | |||| || |||||||||||||| |||
Sbjct 1080 GCTTATGAAGATGCCGTCATGCAAAGACTGCTACAGGCGGCTATGGACCAGAAAAAGCGA 1139
Query 903 GGGGTT-AAGCCAAATGATCAAGAATAAAGCCTGCTTCAAGACCAAAG 949
|||||| |||||| ||||||||||| ||||| | ||||||||||||||
Sbjct 1140 GGGGTTTAAGCCACATGATCAAGAACAAAGC-TCCTTCAAGACCAAAG 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46516820122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5