BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941893
Length=913
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23680.1 | Symbols: | Sterile alpha motif (SAM) domain-cont... 1352 0.0
AT3G48800.1 | Symbols: | Sterile alpha motif (SAM) domain-cont... 285 5e-76
> AT5G23680.1 | Symbols: | Sterile alpha motif (SAM) domain-containing
protein | chr5:7985354-7986851 REVERSE LENGTH=1498
Length=1498
Score = 1352 bits (732), Expect = 0.0
Identities = 870/930 (94%), Gaps = 35/930 (4%)
Strand=Plus/Plus
Query 12 tctctctctcGCTGACTATGGCCGAGTTACAGTTAGTAGAAGGTCACCAGATTAACGGCG 71
||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 TCTCTCTCTCGTTTTCCATGGCCGAGTTACAGTTAGTAGAAGGTCACCAGATTAACGGCG 434
Query 72 GTTTTATCCCGCCGGCGATAATAAACTCAATCGAAGCACCGGAAACATCCGCCGCAGCCG 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 GTTTTATCCCGCCGGCGATAATAAACTCAATCGAAGCACCGGAAACATCCGCCGCAGCCG 494
Query 132 GCGTTTCAGTCGGATCGAAACGATTGAGAAGACCTAGCGTTAGGTTAGGAGACATCGGCG 191
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 GAGTTTCAGTCGGATCGAAACGATTGAGAAGACCTAGCGTTAGGTTAGGAGACATCGGCG 554
Query 192 GTGACCAGTACCACCAACAAGTGGTTGCGGCGTACGATTCTCCGCAAGTGCGAAGGCCGA 251
||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 555 GTGACCAGTACCACCAACACGTGGTTGCGGCGTACGATTCTCCGCAAGTCCGACGGCCGA 614
Query 252 AATGGAGACCTA---------gtggtggtggtggtggtAACAGGAAGGACCCGAATAATC 302
|||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 615 AATGGAGACCTAGTGGTGGTGGTGGTGGTGGTGGTGGTAACAGGAAGGAGCCGAATAATC 674
Query 303 AGAGTGGGAAGACGACGTCTTCGTCGAGGACTCGAACTATGACGAATTTGAGCTCCGGTG 362
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 675 AGAGTGGGAAGACGACGTCGTCTTCGAGGACTCGAACTATGACGAATTTGAGCTCCGGTG 734
Query 363 GGTATGAGAATACTGGAACCCTAGATGAAGATCCGATTTCGATTGGGAGTTGGCGGGTTA 422
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 735 GGTATGAGAATACTGGAACCCTAGATGAAGATCCGGTTTCGATTGGGAGTTGGCGGGTTA 794
Query 423 AGAAATGGGTCAAATCATCCGGTGGACAGA---C-G-G-CG--G-CGACGAATACAG-TA 472
|||||||||||||||||||||||||| ||| | | | || | |||||||||||| |
Sbjct 795 AGAAATGGGTCAAATCATCCGGTGGAGAGACGGCGGCGACGACGACGACGAATACAGCT- 853
Query 473 TCGGCGAAGCGAGTTCGATCGAATTGGGCGACgagaaacgatggagat-gagaaattcag 531
||||||||||||||| | |||||||||||||||||||||||||| | | ||| || ||
Sbjct 854 TCGGCGAAGCGAGTTAGGTCGAATTGGGCGACGAGAAACGATGGTG-TAGAGCAA-GGAG 911
Query 532 -tggaggaga---agagg-ga-gaagaagaagaggaagaggaagaagaatt--g-ggaga 582
| || || | || || || |||||||||||||||||||| |||||||| | |||||
Sbjct 912 AT-GA-GAAATTCAGTGGAGAGGAAGAAGAAGAGGAAGAGGATGAAGAATTGGGAGGAGA 969
Query 583 agaagggtttagggatttcagcagagaagaTTCGGAGAGTCCGATGAAAGAACGAAGACG 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 AGAAGGGTTTAGGGATTTCAGCAGAGAAGATTCGGAGAGTCCGATGAAAGAACGAAGACG 1029
Query 643 GTACGAGAATAGAGAGGTTGAATTGTTAGGAGATTGGCAGAGTGGAGGAAGAGGAAAAGA 702
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1030 GTACGAGAATAGAGAGGTTGAATTGTTAGGAGATTGGCAAAGTGGAGGAAGAGGAAAAGA 1089
Query 703 AGGAGTGAAGATATGGTTACAAGAGTTAGGGTTAGGGAGATATTGGCCAATGTTTGAGAT 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 AGGAGTGAAGATATGGTTACAAGAGTTAGGGTTAGGGAGATATTGGCCAATGTTTGAGAT 1149
Query 763 GCATGAAGTTGATGAACAAGTGTTACCATTGTTGACATTGGAGGATCTTAAAGATATGGG 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 GCATGAAGTTGATGAACAAGTGTTACCATTGTTGACATTGGAGGATCTTAAAGATATGGG 1209
Query 823 GATTAATGCTGTTGGGTCTAGGAGGAAGATGTATTGTGCAATTCAAAAGCTTGGAAGGGA 882
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1210 GATTAATGCTGTTGGGTCTAGGAGGAAGATGTATTGTGCAATTCAGAAGCTTGGGAGGGA 1269
Query 883 GTTCTCGTGAAAA-TGGTGGAAGAGTTTTG 911
||||||||||||| ||||||||||||||||
Sbjct 1270 GTTCTCGTGAAAAATGGTGGAAGAGTTTTG 1299
> AT3G48800.1 | Symbols: | Sterile alpha motif (SAM) domain-containing
protein | chr3:18095825-18096661 REVERSE LENGTH=837
Length=837
Score = 285 bits (154), Expect = 5e-76
Identities = 191/209 (91%), Gaps = 1/209 (0%)
Strand=Plus/Plus
Query 685 TGGA-GGAAGAGGAAAAGAAGGAGTGAAGATATGGTTACAAGAGTTAGGGTTAGGGAGAT 743
|||| ||| ||||||||||||| |||||||| ||| ||||||||||||||||||||||||
Sbjct 629 TGGATGGAGGAGGAAAAGAAGGGGTGAAGATTTGGCTACAAGAGTTAGGGTTAGGGAGAT 688
Query 744 ATTGGCCAATGTTTGAGATGCATGAAGTTGATGAACAAGTGTTACCATTGTTGACATTGG 803
||||||| ||||||||||| ||||| ||||||||| | || |||||||||||||||||||
Sbjct 689 ATTGGCCTATGTTTGAGATACATGAGGTTGATGAAGAGGTTTTACCATTGTTGACATTGG 748
Query 804 AGGATCTTAAAGATATGGGGATTAATGCTGTTGGGTCTAGGAGGAAGATGTATTGTGCAA 863
| |||||||||||||||||||||||||||||||| || ||||||||||||| |||||| |
Sbjct 749 AAGATCTTAAAGATATGGGGATTAATGCTGTTGGATCGAGGAGGAAGATGTTTTGTGCTA 808
Query 864 TTCAAAAGCTTGGAAGGGAGTTCTCGTGA 892
||||||||||||| ||||||||||| |||
Sbjct 809 TTCAAAAGCTTGGTAGGGAGTTCTCATGA 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44607922536
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5